PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g05550.1.p
Common NameBRADI_1g05550, LOC100831368
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 348aa    MW: 39021.6 Da    PI: 5.4776
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g05550.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71.1e-34361272102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y++++d++++ ++sws+++nsfvv+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+ + F +g+++ll
  Bradi1g05550.1.p  36 FLAKTYDMVDDPTTDAVVSWSATNNSFVVWDPRMFGTVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFASEGFLRGQRHLL 119
                       9********************999*****************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++ikr+k 
  Bradi1g05550.1.p 120 KNIKRRKP 127
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-3532125IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-3832125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-5932125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-203659IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-3136125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-207486IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407599IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-208799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MMMNPVKVES RASSVAANGA APRPMDALAD AGPTPFLAKT YDMVDDPTTD AVVSWSATNN  60
SFVVWDPRMF GTVLLPRYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFASEG FLRGQRHLLK  120
NIKRRKPPQA SPNQQSRGSY LEVGHFGYDG EIDRLKRDKQ LLMAEVVKLR QEQQNTRAGL  180
HAMEERLQGT EQKQQQMMSF LARVMHNPEF IHQLVSQSEM RKELEDAISN KRRRRIDQGP  240
EAVDSTDTNS SLEQGSQIMF EPPDPVDAFI NGSPSDLESS SVETKGAEVQ QGAASGSSPP  300
LKGRPSRELN DDFWEDLLHQ GGLTGDEAGD PVVPDDMNFF AQKMNFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-263112512120Heat shock factor protein 1
5d5u_B2e-263112521129Heat shock factor protein 1
5d5v_B2e-263112521129Heat shock factor protein 1
5d5v_D2e-263112521129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124LKNIKRR
2230235KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g05550.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557472.10.0heat stress transcription factor A-2e
SwissprotQ6F3880.0HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLI1GM850.0I1GM85_BRADI; Uncharacterized protein
STRINGBRADI1G05550.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-103heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]