PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g05430.1.p | ||||||||
Common Name | BRADI_1g05430, LOC100831162 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 282aa MW: 30245 Da PI: 6.0414 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.1 | 1.5e-08 | 131 | 175 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ K + a++L + +Y+k L Bradi1g05430.1.p 131 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 175 99***********************7.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.69E-10 | 124 | 180 | No hit | No description |
SuperFamily | SSF47459 | 5.76E-15 | 124 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.77 | 126 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-14 | 128 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.4E-6 | 131 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 132 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MAGQPPQASE DDFLDQFFSL TNSLSAGGRP SGDQPFSLAL SLDAAADASG SRDRLGDADD 60 VGKSERDSVQ LSGLFPPVFG GVGQPPHLRP SPPAQMFHAQ QPKQGGSAVG PQPPAPRPKV 120 RARRGQATDP HSIAERLRRE RIAERMRALQ ELVPNTNKTD RAAMLDEILD YVKFLRLQVK 180 VLSMSRLGGA GAVAQLVADI PLSVKGEASD SGSNQQIWEK WSTDGTERQV AKLMDEDIGA 240 AMQFLQSKAL CMMPISLAMA IYDTQHSQDG QPVKPEPNSH S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 140 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g05430.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK104412 | 0.0 | AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010228376.2 | 0.0 | transcription factor UNE12 | ||||
Swissprot | O22768 | 2e-74 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A0Q3RHI2 | 0.0 | A0A0Q3RHI2_BRADI; Uncharacterized protein | ||||
STRING | Traes_5BL_DB5410008.2 | 1e-167 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2656 | 35 | 80 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 2e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g05430.1.p |
Entrez Gene | 100831162 |
Publications ? help Back to Top | |||
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