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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g05346.2.p | ||||||||
Common Name | BRADI_1g05346 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 351aa MW: 37058 Da PI: 9.9933 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 30.5 | 7.4e-10 | 321 | 340 | 2 | 21 |
--SS-EEEEEEE--TT-SS- CS WRKY 2 dDgynWrKYGqKevkgsefp 21 D y+WrKYGqK++kgs++p Bradi1g05346.2.p 321 ADNYSWRKYGQKPIKGSPHP 340 69****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.7E-14 | 283 | 318 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.3E-9 | 310 | 341 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.082 | 315 | 350 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-7 | 318 | 341 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0047 | 320 | 349 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.9E-6 | 322 | 341 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MEGVEEANRA AVGSCKKLVA SLARSGGDPF RPTAGGAETD EAVAMFGKVV TILSNRVGHA 60 RARVGAGRKR SSPPLDPSCL LEYHPPPPNN GFRVHGHGSC TPAPPPPPPP VTSKDVLPAA 120 EVDYRAMFLE TPLLDLNGCT ATAPATATAS SSIVAMAAPV QQINTSKSPA VTTNPPPLPP 180 CATKIQFHQH LNQQQQQQQQ GKRVQFEQQQ KAAPGGGGGE KQQFHMEMAP RSKEPEVISF 240 SFDNNSACTS SASFFTSISS QLISMSDAAA APAPRTKAAG CGKKGEVDAD GRCHCPKKKK 300 PREKRVVRMP AISDKVADIP ADNYSWRKYG QKPIKGSPHP SETKATTKKS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g05346.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370043 | 2e-53 | AK370043.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2104B06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014752047.1 | 0.0 | protein WRKY1 | ||||
TrEMBL | A0A0Q3GNS0 | 0.0 | A0A0Q3GNS0_BRADI; Uncharacterized protein | ||||
STRING | Traes_5BL_E294922A9.2 | 4e-82 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.2 | 4e-17 | WRKY DNA-binding protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g05346.2.p |