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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g05037.2.p | ||||||||
Common Name | BRADI_1g05037, LOC100827822 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 205aa MW: 22186.4 Da PI: 6.7967 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.9 | 9.8e-10 | 124 | 171 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++Y++ L+ Bradi1g05037.2.p 124 SHSLAERARREKITERMKILQDLVPGC----NKVIGKASVLDEIINYVQALE 171 8*************************9....677**************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.26E-8 | 118 | 175 | No hit | No description |
SuperFamily | SSF47459 | 5.63E-17 | 118 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-18 | 120 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.663 | 120 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-7 | 124 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-10 | 126 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MDPAAEPSWR PPAAASGASS AVTGQSNGRR RRQQPRTEPP PPSEDDSSRP VSTSGGGGSQ 60 DLIDSEAKRF RANKSSDDNG SFRTDAEGDS RNGSKVVDQN PPPPEPPKQD YIHVRARRGQ 120 ATDSHSLAER ARREKITERM KILQDLVPGC NKVIGKASVL DEIINYVQAL ERQVEFLSMK 180 LEAVNAHVNN GVETFPSKDV SCVE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g05037.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100863 | 0.0 | FP100863.1 Phyllostachys edulis cDNA clone: bphyem119i23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559284.1 | 1e-144 | transcription factor BHLH089 | ||||
Swissprot | Q84T08 | 3e-84 | BH089_ORYSJ; Transcription factor BHLH089 | ||||
TrEMBL | A0A2K2DI48 | 1e-147 | A0A2K2DI48_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G05037.1 | 1e-143 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 3e-53 | BIG PETAL P |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g05037.2.p |
Entrez Gene | 100827822 |
Publications ? help Back to Top | |||
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