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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g04510.4.p | ||||||||
Common Name | BRADI_1g04510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bZIP | ||||||||
Protein Properties | Length: 306aa MW: 32669.3 Da PI: 7.7021 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 73.2 | 3.8e-23 | 190 | 252 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq NR +ArrsR+RK++e+eeL++kv eL+a N Lk+e+++lkk ++ +++e+ Bradi1g04510.4.p 190 ERELKRERRKQANRDSARRSRLRKQQECEELAQKVTELTAINGVLKSEIDQLKKDCEDMEAEN 252 89*********************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.6E-16 | 184 | 249 | No hit | No description |
Pfam | PF00170 | 3.0E-21 | 190 | 252 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 1.5E-19 | 190 | 254 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.553 | 192 | 255 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.13E-10 | 193 | 248 | No hit | No description |
CDD | cd14702 | 1.55E-17 | 195 | 245 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 197 | 212 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MAPGPAYGVP VPFPMYHHPA YYAHAPMAAG APYMVGEAAS AVTVEGNNRK RKTTRVPSGD 60 DASDDDGSQG SSAKTAPGAD PDQKFVQGSS SAKRRKSPGA ANTEGEPSQA ATTMMHNAVT 120 EAPFMGKGRS ASKLSVLAPG RVARTNAIPN LNIGMGHSNT SSSTMMPSGQ GEVNVGASSQ 180 SNGSLSRMDE RELKRERRKQ ANRDSARRSR LRKQQECEEL AQKVTELTAI NGVLKSEIDQ 240 LKKDCEDMEA ENTQLMDEVL THDDEMLESE DPSVLTTLSI QVDVLTARRG RNSKLHKSNN 300 DVSKG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 206 | 212 | RRSRLRK |
2 | 206 | 213 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g04510.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024312498.1 | 0.0 | DNA-binding protein EMBP-1 | ||||
Swissprot | P25032 | 5e-83 | EMBP1_WHEAT; DNA-binding protein EMBP-1 | ||||
TrEMBL | A0A0Q3N7C3 | 0.0 | A0A0Q3N7C3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G04510.1 | 1e-164 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 5e-26 | basic region/leucine zipper transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g04510.4.p |