PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g03245.1.p
Common NameBRADI_1g03245
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 331aa    MW: 36034.8 Da    PI: 5.2333
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g03245.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.92.1e-1591503128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.........kvkaeek...ewyfFsk.....rdkkya...tgkrk 74 
                       +G+ F P + el + yL+  ++g++++ + + ++++diy++eP++L +         k   ++k    wyf s+     r+k+ +   +gk+ 
  Bradi1g03245.1.p   9 VGMTFCPPELELTDLYLHDDIAGHPVRSAAAfFHRADIYSAEPEELVEglqhapgtdK---GDKpqpAWYFLSPvrcvgRQKA-QnssSGKKM 97 
                       79***********************87766669*************754666664332...33345699**986222222222.223368899 PP

               NAM  75 nratksgy.WkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                       +ra+ +g  W+    +k+vl+  +++ g  kt+ + +    +  ++  W+m+ey++
  Bradi1g03245.1.p  98 QRAVVEGKtWHMES-QKPVLD--SAVGGHVKTFSYVTSgPGRGRQRLGWIMKEYSI 150
                       99666664499765.599998..7889*********65144445689*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.3517167IPR003441NAC domain
SuperFamilySSF1019416.02E-209167IPR003441NAC domain
PfamPF023651.6E-109150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
METPTAGVVG MTFCPPELEL TDLYLHDDIA GHPVRSAAAF FHRADIYSAE PEELVEGLQH  60
APGTDKGDKP QPAWYFLSPV RCVGRQKAQN SSSGKKMQRA VVEGKTWHME SQKPVLDSAV  120
GGHVKTFSYV TSGPGRGRQR LGWIMKEYSI SPENGGGDLV LCKIYRTNYG KKSSSAAAAV  180
SNSGESSTNK KRKAASCEHP ETLPSARPKQ THDQAQNYSA AAELYGATDQ LPPWSTQDSF  240
LQSSSELYTT SWITEELQPP CSTQDGFLPS SSELYEATSA YMPAGREQDL GLPSLTQEQV  300
EPPPLPEDDV RVDSQQWDDN NGGHAGNRRA G
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g03245.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3GPM10.0A0A0Q3GPM1_BRADI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.11e-10NAC domain containing protein 63