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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g02410.1.p | ||||||||
Common Name | BRADI_1g02410, LOC100843911 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 401aa MW: 42264.3 Da PI: 7.5141 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.4 | 6.5e-07 | 144 | 166 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F+r nL+ H+r H Bradi1g02410.1.p 144 HSCKLCGKGFKRDANLRMHMRAH 166 79*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.21E-5 | 143 | 167 | No hit | No description |
SMART | SM00355 | 0.0016 | 144 | 166 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.926 | 144 | 166 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.5E-5 | 144 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 37 | 198 | 231 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 58 | 236 | 259 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MEAWDVRNGT GHGGGNGRGA EAEDGRSASA SAAALTTYLA FLEHKIGHLR GIICSPAPSL 60 PQQQQVVSAE LACIISQLAS IANDLATDAG TPSSPASSPS AGTPNAHAVD DEQQQEPVGS 120 SSSPPAYEVI ELDKEEILAP PHAHSCKLCG KGFKRDANLR MHMRAHGHSY NHKKEVNVSP 180 PPAPETKTKK RPAPAVCYSC PQAGCKRNRA HASFAPLKTA VCVRNHYRRT HCAKTHACRR 240 CGGVKRFAVL ADLRTHEKHC GRDRWVCSCT VSFSRRDKLL AHVALFPAGA GHSPALPLLP 300 DETAAAQCST GNNDTANGGG GRVTGSGELL PGTGTGGGDM MDQSFLSDIG MLDDFGCSDV 360 KGSIREDDGR RRGSLSPAGL DFCDFDGFDL FGTHAMNFDF * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g02410.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559181.1 | 0.0 | zinc finger protein STAR3 | ||||
TrEMBL | I1GL41 | 0.0 | I1GL41_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G02410.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 | Representative plant | OGRP830 | 16 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 2e-67 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g02410.1.p |
Entrez Gene | 100843911 |