PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g01807.1.p
Common NameBRADI_1g01807
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 356aa    MW: 38698.8 Da    PI: 4.2681
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g01807.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.34.5e-1731432127
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknra..tk...sg 81 
                       +pG+ F+P++eel +  L  k++g   ++  +i+ +d+y+++P++L k            +e ewyfFs+ + ++++++  +ra  +    + 
  Bradi1g01807.1.p   3 APGCAFEPSEEELTDVCLYGKITGAGRDT-GAIHVADVYSADPETLAKsfapapgtGRGDKEPEWYFFSPVHYASKKKNSGRRAriIGgdsNK 94 
                       69************************999.89**************85577777532222445******988776655544443223333355 PP

               NAM  82 yWkatgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyr 127
                        W++     +v   ++++ g k  L++      +g+++k e++ W++ e+ 
  Bradi1g01807.1.p  95 KWHSEIGAVPVE--GSAVGGHKVNLTYMvrsnaSGEKKKHERAGWILAEFG 143
                       699887766665..588999*******99888879999999********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.2612161IPR003441NAC domain
SuperFamilySSF1019418.24E-193160IPR003441NAC domain
PfamPF023652.1E-94143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAAPGCAFEP SEEELTDVCL YGKITGAGRD TGAIHVADVY SADPETLAKS FAPAPGTGRG  60
DKEPEWYFFS PVHYASKKKN SGRRARIIGG DSNKKWHSEI GAVPVEGSAV GGHKVNLTYM  120
VRSNASGEKK KHERAGWILA EFGIAPEHGG GQLELCKLHR SPHFQETAAG SKKRKAAAAD  180
ELYSADRCKN LCLRQEMPEE LEEIETMEGG AAAVDLQEEP VLDDTARWMM YLETQRMYFS  240
DDIQGTQQQQ QVPILDDTWR LALEEIERQL LPDDETLGGA RKVMDPAEED ESGGGTEQQG  300
GCDDEDDGRM ECTWEELLGI DGDVDDDDMA MASNAAAAAA ACEGQQLHVA AEGCIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g01807.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229409.10.0NAC domain-containing protein 17
TrEMBLA0A0Q3GLX70.0A0A0Q3GLX7_BRADI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2274024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.19e-10NAC domain containing protein 35