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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g01130.1.p | ||||||||
Common Name | BRADI_1g01130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HSF | ||||||||
Protein Properties | Length: 622aa MW: 67716.3 Da PI: 4.6805 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.6 | 5.4e-35 | 48 | 138 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+ye+++d+ ++ ++sw +nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll Bradi1g01130.1.p 48 FLMKTYEMVDDPGTDAVVSWGPGNNSFIVWNTPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLL 131 9*********************99*****************************************999.........**************** PP XXXXXXX CS HSF_DNA-bind 95 ekikrkk 101 ++i+r+k Bradi1g01130.1.p 132 KTINRRK 138 *****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.2E-38 | 42 | 132 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.4E-61 | 44 | 137 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.45E-35 | 44 | 137 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.4E-30 | 48 | 137 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-19 | 48 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-19 | 86 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 87 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-19 | 99 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 622 aa Download sequence Send to blast |
MEGGVVAAAA AAAAAAATVT TAVSPPPAPP AAASNGGGGA AAAAPPPFLM KTYEMVDDPG 60 TDAVVSWGPG NNSFIVWNTP EFARDLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN 120 EGFLRGQKHL LKTINRRKPL HGNNQMQVQQ QQQQQQQPQL QNAPIPACVE VGKFGMEEEI 180 EMLKRDKNVL MQELVRLRQQ QQTTDHQLQT LGKRLQGMEQ RQQQMMSFLA KAMQSPGFLA 240 QFVQQNENSR RRIVAANKKR RLPKQDDGLD SESASLDGQI IKYQPMINEA ATAMLRKILQ 300 QDSSHRYESM GNSDNFLLEN SMPTAQAFDS SSSTRNSAVT LAEVPGNSSI PYMATSSGLS 360 AICSSSTPAE IQHPVLDNIL SKELPNMSSA PSVPTAMAPG PNDIGIPGFP DLHDIITEDV 420 VGIPGGSFEM PGPECIFPLP EDGDDSIPID TDEILSSDDT QKLPAIIDSF WEQFLVTSPL 480 SVDNDEVDSG LLDTREAQLD NGWARTDNLA NLTEQMGLLS SNHRGKHTEN CLSTDDMWED 540 SSVGPARNMV LLRGYYLLVS KVFAGVRRKS GSMVTCYVCI MASLQLCVVT ADSFGCAIWL 600 QLTCGNTAGQ LYSQPSVVEL A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-27 | 36 | 137 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-27 | 36 | 137 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-27 | 36 | 137 | 17 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g01130.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354917 | 0.0 | AK354917.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1013F08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559114.1 | 0.0 | heat stress transcription factor A-1 | ||||
Swissprot | Q84T61 | 0.0 | HSFA1_ORYSJ; Heat stress transcription factor A-1 | ||||
TrEMBL | I1GKP1 | 0.0 | I1GKP1_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G01130.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5097 | 31 | 51 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-122 | heat shock factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g01130.1.p |
Publications ? help Back to Top | |||
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