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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g00219.1.p | ||||||||
Common Name | BRADI_1g00219 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRAS | ||||||||
Protein Properties | Length: 274aa MW: 30685.6 Da PI: 9.7678 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 186.8 | 1.5e-57 | 36 | 269 | 2 | 235 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 + lL++cAeav+s+dl+ a+++L++++ +sp+gd+ qRla+yf+++L+arla+++s+ y++l ++ts ++e ++a++l+ ++ +lk++ Bradi1g00219.1.p 36 EMLLIRCAEAVASNDLHSASEVLEQIKRYSSPTGDARQRLAHYFAQGLEARLAGTGSQFYRSLIGTRTS---TVELVKAYHLYDATFCFLKVA 125 579***********************************************************9888887...899****************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 +l N+ I++av+g +++Hi+ ++i+ GlQWp L+q La R++gpp +R+ ++ p++g e++ee g+rL+++A+++g++++f++ ++ + Bradi1g00219.1.p 126 FLFSNKIIYKAVAGRKKLHIVHYGINLGLQWPDLIQWLAGREDGPPVVRMISINIPQPGfsPYEQIEEAGHRLSNYASKFGMSIKFQA-ITGK 217 **********************************************************99999*************************.6899 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvksls 235 e+++ e+L+++p+E+l+Vn+ +q +l+d+s++ + +rd vL ++++++ Bradi1g00219.1.p 218 PEAVRAEDLHIDPDEVLVVNSLFQFRTLMDDSLKFDRvsPRDMVLGTIRKMK 269 ********************************99887779*********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 38.341 | 9 | 273 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.0E-55 | 36 | 269 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MQEVLITLDN ENKAARKSIR MGGRRGAMQA VVTHLEMLLI RCAEAVASND LHSASEVLEQ 60 IKRYSSPTGD ARQRLAHYFA QGLEARLAGT GSQFYRSLIG TRTSTVELVK AYHLYDATFC 120 FLKVAFLFSN KIIYKAVAGR KKLHIVHYGI NLGLQWPDLI QWLAGREDGP PVVRMISINI 180 PQPGFSPYEQ IEEAGHRLSN YASKFGMSIK FQAITGKPEA VRAEDLHIDP DEVLVVNSLF 240 QFRTLMDDSL KFDRVSPRDM VLGTIRKMKL MAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-26 | 41 | 239 | 25 | 220 | Protein SCARECROW |
5b3h_A | 2e-26 | 41 | 239 | 24 | 219 | Protein SCARECROW |
5b3h_D | 2e-26 | 41 | 239 | 24 | 219 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g00219.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238972.2 | 1e-178 | scarecrow-like protein 14 | ||||
TrEMBL | A0A0Q3GL33 | 0.0 | A0A0Q3GL33_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G09235.1 | 1e-139 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22738 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 6e-63 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g00219.1.p |