PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.9600s0046.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | G2-like | ||||||||
Protein Properties | Length: 106aa MW: 12096.8 Da PI: 9.1962 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33.3 | 1.1e-10 | 80 | 104 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+rl W+++LH++Fv+av++LGG++ Bostr.9600s0046.1.p 80 KARLWWSSDLHDCFVNAVKKLGGPN 104 68*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-8 | 77 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.9E-9 | 80 | 105 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MKKKEKGKEV VTFEENPSTS VHHLDHFHHK EKDSMLLREQ EIEVLLQKKS KKDNTEKAGI 60 EKGKTSSKIT PCIFYTSDEK ARLWWSSDLH DCFVNAVKKL GGPNS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.9600s0046.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006413 | 1e-49 | AC006413.4 Arabidopsis thaliana chromosome 2 clone F5K7 map ve013, complete sequence. | |||
GenBank | CP002685 | 1e-49 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020886266.1 | 4e-51 | transcription repressor KAN1 | ||||
TrEMBL | D7L9C8 | 1e-49 | D7L9C8_ARALL; Uncharacterized protein | ||||
STRING | Bostr.9600s0046.1.p | 1e-71 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13406 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G06020.1 | 9e-48 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.9600s0046.1.p |