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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.9345s0035.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | G2-like | ||||||||
Protein Properties | Length: 255aa MW: 28122.9 Da PI: 9.3157 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.9 | 3e-30 | 108 | 161 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Bostr.9345s0035.1.p 108 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMSVEGLTRENVASHLQKYRL 161 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.19 | 105 | 164 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.2E-20 | 105 | 165 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-30 | 107 | 166 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.1E-24 | 109 | 161 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.0E-7 | 111 | 160 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MREDNPNCFL RWEEELPSPE ELIPISQTLI TPHLALAFQI GSPNHHLGSK RTTAIYHHHQ 60 KVQSSTTPTT PTPTPPQPMM MNSDFGGGDS TDLGSGSVGG EPARTLKRPR LVWTPQLHKR 120 FVDAVGHLGI KNAVPKTIMQ LMSVEGLTRE NVASHLQKYR LYLRRMQGGN GNGISGGHVI 180 VSDSATDRLF ASSPVPAHFL SPHEYLMPPL EHSYMGKHVI TQQNQVVRNL RYEDSEYGNG 240 DAGRKILKLF PAGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 3e-32 | 108 | 164 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.9345s0035.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC002409 | 0.0 | AC002409.3 Arabidopsis thaliana chromosome 2 clone T20B5 map CIC11C08, complete sequence. | |||
GenBank | AC004261 | 0.0 | AC004261.3 Arabidopsis thaliana chromosome 2 clone T3K9 map CIC11C08, complete sequence. | |||
GenBank | AY072381 | 0.0 | AY072381.1 Arabidopsis thaliana unknown protein (At2g40970) mRNA, complete cds. | |||
GenBank | BT000098 | 0.0 | BT000098.1 Arabidopsis thaliana unknown protein (At2g40970) mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010505861.1 | 1e-153 | PREDICTED: transcription factor PCL1-like | ||||
Swissprot | O22210 | 1e-142 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A178VYV1 | 1e-140 | A0A178VYV1_ARATH; MYBC1 | ||||
STRING | Bostr.9345s0035.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1549 | 27 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40970.1 | 1e-117 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.9345s0035.1.p |
Publications ? help Back to Top | |||
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