PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.8819s0021.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 1359aa    MW: 154255 Da    PI: 6.7182
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.8819s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY40.17.2e-1311591216259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEE.E-SSSTTEEEEEEES--SS- CS
                 WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkve.rsaedpkvveitYegeHnhe 59  
                           +D + W KY      + ++ rsYYrC+s+   gCp++k+v   s +d +++++tY +eHnh+
  Bostr.8819s0021.1.p 1159 SDLWDWEKY----FDDYPNDRSYYRCSSKlleGCPARKHVGpASCTDRNMLVTTYISEHNHP 1216
                           699999999....6789***********9999********834568***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522007.06E-511107IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525401.73E-52148394IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3006.2E-9168295IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009316.6E-25168403IPR002182NB-ARC
PRINTSPR003648.2E-23174189No hitNo description
PRINTSPR003648.2E-23246260No hitNo description
PRINTSPR003648.2E-23334348No hitNo description
SuperFamilySSF467851.12E-12371472IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520584.01E-31506818IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.4E-28511808IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077251.4E-8574592IPR011713Leucine-rich repeat 3
PRINTSPR003648.2E-23740756No hitNo description
Gene3DG3DSA:2.20.25.804.9E-1411511218IPR003657WRKY domain
PROSITE profilePS5081116.90311531218IPR003657WRKY domain
SuperFamilySSF1182907.19E-1211541218IPR003657WRKY domain
SMARTSM007742.9E-1211581217IPR003657WRKY domain
PfamPF031063.3E-1111601216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1359 aa     Download sequence    Send to blast
MTICEKTEQF VCISCVDEVR YSFVSHLSEA LRRKGIKDVV IDVDSDDLLS KDSQAKLEKA  60
RVSVIVLPGN CDPAKIWLDK FVKVLEFPRN KDQLVVPVLY GDSPLQDEWL SALNLGGLSP  120
IHQSRKECSD AKLVEEIVRD VYDKLFYMGR IGIYSKLLEI ENMVCKQPLD DIRCVGIWGM  180
PGIGKTTLAE ALFDQISGEF DAYCFIKDYD KVIHENGLYR LLEEQFLKEK PGAYGDITKF  240
SLLKNKLYNK RVLVVLDDVR NPLVAEPFLG GFDWFGPKSL IIITSRDKQV LRLCEVNQIY  300
EVQGLNEKEA RQLFSSCLEE QNLDELSMKV IKYANGHPLA LKIYGRELKC KRKLSEMETA  360
FLKLKRRPPF KIVDAFKSSY DTLSDSEKNI FLDIACFFQG ENVDYVMQLL EGCGFFPRVG  420
IDVLVEKHLV TISDNCVRMH NLIQGVGREI INGETVQVER RSRLWEPWSV KYLLEDNEEK  480
ENGEPKTTFK RFQGTKEIEG MFLDTSNLSF DVKPTAFENM LNLRLLKIYC SNPKNHPVIN  540
FPKGFLHSLP NELRLLHWES YSLQSLPQSF DPSHLVEINM PYSQLQKLWD GTENLEMLRT  600
IRLCHSQQLV DIGDLLKAQN LEVIDLQGCT RLQSFPATGK LLHLRVVNLS GCTEVKIFPE  660
IPPNIETLHL QGTGIEKLLI PKPNGGELVS LSELKGLPDA LKLERLTSLE KSSLSSQVLG  720
KLICLNLKDC SRLQSLPNMV NLKLLKVLDI SGCSELKTIK GFPPNLKQLY IAGTVVRKVP  780
QLPQSLQLLS AHGCVSLKSI HFDFEKLPVH YTFSNCFDLS PEMVNVFLVK VLSNAEHIPR  840
ERQQELKESP AFSFCAPSHA KNISTLDLNL GSSLMTRLIP SWRNTLVGFA MLVEVAFSED  900
YCDATGFGIR CVCKWYNKEG HSHRIERNLH CWALGKAVQK AHMFVFCDVN VRPSTDEGND  960
PNIWADLVVF EFYPVNKETK PLDDCCRVKK CGVRVITAAN CNTSLENVSP VLSLDPMEFS  1020
GYGYEEVLRV NYVNLKEMEK VLFLYIACLF NDEDVDFVAP LIANIIDMDV SSGLKVLAGR  1080
SLIRVLSNGE IRMHLLLRQM GKELLRTKSM LPGSAKKSER LVENSLVFVT THSKNTENWT  1140
NNLSDVPKKK RKADHVVPSD LWDWEKYFDD YPNDRSYYRC SSKLLEGCPA RKHVGPASCT  1200
DRNMLVTTYI SEHNHPRPTK RKALAGSTRF SSPSNCSAVT TCVSQNKVEP NKSNLASPST  1260
SQNASAVVKE EDVEERQNNM EFDNDVKDTY TLELFPKFQH QPEEDPWSTV IFDGESPTKL  1320
VSHSSDIFDD ATKEASEPSI PTRRVSTRTR IANRKYQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4c6t_A7e-6161524151PROBABLE WRKY TRANSCRIPTION FACTOR 52
4c6t_C7e-6161524151PROBABLE WRKY TRANSCRIPTION FACTOR 52
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein involved in resistance to fungal and bacterial pathogens, including R.solanacearum, P.syringae pv. tomato and C.higginsianum. In presence of RPS4, elicites an EDS1-dependent hypersensitive response (PubMed:24146667). {ECO:0000250|UniProtKB:Q9FH83, ECO:0000269|PubMed:19519800, ECO:0000269|PubMed:19826224, ECO:0000269|PubMed:24146667, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.8819s0021.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871855.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 16
SwissprotC4B7M50.0WR52W_ARATH; Disease resistance protein RRS1
TrEMBLD7MKY80.0D7MKY8_ARALL; Predicted protein
STRINGBostr.8819s0021.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2506814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45050.10.0Disease resistance protein (TIR-NBS-LRR class)
Publications ? help Back to Top
  1. Zhang ZM, et al.
    Mechanism of host substrate acetylation by a YopJ family effector.
    Nat Plants, 2017. 3: p. 17115
    [PMID:28737762]