 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bostr.7867s1612.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
| Family |
LBD |
| Protein Properties |
Length: 241aa MW: 26360.2 Da PI: 8.1117 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.7867s1612.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 95.8 | 4.5e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85
+C++C+vlr++C++ C+l+p++ +++q +++ +++k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg+++++++
Bostr.7867s1612.1.p 2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATVFIAKFFGRAGLMSFISAVPELHRPALFQSLLFEACGRTMNPVNGAVGMLWTGNW 91
6*********************9999777889********************************************************** PP
DUF260 86 qleqlkaelall 97
+++q+++e++l+
Bostr.7867s1612.1.p 92 HVCQAAVETVLR 103
******998876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFIA KFFGRAGLMS FISAVPELHR 60
PALFQSLLFE ACGRTMNPVN GAVGMLWTGN WHVCQAAVET VLRGGTLRPI SDLLESPSLM 120
ISSDESSAVL HRDVSRNENN QIHHRCFSAS RSKMEIKDSP INRKRLKSDS DLDLQVNHGL 180
TLTASAVPVP FIPPPSFCKA VNGDRPGSPS EESVTTSCWE NGMRGDNNFK GEKKLLNLFV 240
*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB473874 | 0.0 | AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds. |
| GenBank | AY072144 | 0.0 | AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds. |
| GenBank | AY122976 | 0.0 | AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds. |
