PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7867s1603.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 169aa MW: 19577.6 Da PI: 9.5572 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.2 | 2.1e-18 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie+ +r++ f+kR+ gilKKA+EL LCd+ va+++fs++ kl+ + Bostr.7867s1603.1.p 9 KKIEDRQQRNIAFAKRKSGILKKAYELYALCDVPVALVLFSPSRKLFIF 57 68******************************************99866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.095 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.15E-22 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.2E-19 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MGRVKIQMKK IEDRQQRNIA FAKRKSGILK KAYELYALCD VPVALVLFSP SRKLFIFDAK 60 TRLEETINKY VAQPCYKRPR DSLDDGEIED EIDKHKVELA EVERELGYFL KSPNQWESLA 120 ELQIIEKLHK MTLDKVQSRK KRFESKSKLI NVSGSPLQNS MEENSSVE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-17 | 1 | 94 | 1 | 90 | MEF2C |
5f28_B | 1e-17 | 1 | 94 | 1 | 90 | MEF2C |
5f28_C | 1e-17 | 1 | 94 | 1 | 90 | MEF2C |
5f28_D | 1e-17 | 1 | 94 | 1 | 90 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7867s1603.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411890.2 | 4e-64 | truncated transcription factor CAULIFLOWER D | ||||
TrEMBL | M4D5K6 | 1e-61 | M4D5K6_BRARP; Uncharacterized protein | ||||
STRING | Bostr.7867s1603.1.p | 1e-120 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 1e-23 | AGAMOUS-like 66 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7867s1603.1.p |