PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Bostr.7867s1421.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

C2H2

Protein Properties

Length: 262aa MW: 27294.1 Da PI: 4.9496

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.7867s1421.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	129	150	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cg+ F ++ H+r H Bostr.7867s1421.1.p 129 VCHICGRGFGSWKAVFGHMRAH 150 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	130	150	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MKVDDSDGER EDSDKQWSDD ESETREIVLG LPALSISRIF GDSSVVEREE EEARLNEQAV 60 VAAELVMAAA EEAVLKGKSK EGGSGGKKKS RPRKSKKTDD EADGSGKGEA KKPKKKGAEL 120 THQPKGPPVC HICGRGFGSW KAVFGHMRAH RERNYQGFLP PPTFSAAAEV FSIPGQNSAF 180 VLLTAGGGSS AGFVGGGGSS GGFSASGGGG ATGGEGRKGL GIDLNVEPVE EVEEATESGS 240 IAKFDLNKSP LKDEEEEDKA K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.7867s1421.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006285977.1	1e-111	uncharacterized protein LOC17880279
TrEMBL	R0H2J1	1e-110	R0H2J1_9BRAS; Uncharacterized protein
STRING	Bostr.7867s1421.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5875	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35610.1	2e-66	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Bostr.7867s1421.1.p