PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1322.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TALE
Protein Properties Length: 520aa    MW: 58710.3 Da    PI: 6.0424
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1322.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-083403771954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  Bostr.7867s1322.2.p 340 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 377
                          664459******************************88 PP
2BELL121.82.8e-39206277172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erqe+q+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++a +g+akpYt+lAl++iSrhFr+L+dai++ i
  Bostr.7867s1322.2.p 206 ERQEMQSKLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIASYGAAKPYTALALQTISRHFRSLRDAISGEI 277
                          79******************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-70141275IPR006563POX domain
PfamPF075261.2E-47147274IPR006563POX domain
PROSITE profilePS5007111.758318381IPR001356Homeobox domain
SMARTSM003891.0E-8321385IPR001356Homeobox domain
CDDcd000861.18E-10321382No hitNo description
SuperFamilySSF466891.5E-16322387IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-26324386IPR009057Homeodomain-like
PfamPF059209.9E-18338377IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDNYPETQFL PRNAMIHMNA TVSYSDELAS RGRTEANNNV SASQERQASS RFGQVSQMQD  60
VDQDFGSWRD QASDRNGFQL MSAMAGATGH LHTGQGLSLS LGSQILPGIH QMSHQSMALR  120
AENFRGNEYA TQSFPGGSQN LDVVKTIPNS KYLKAAQQLL DETVNVSKAL KHFQAEGDKN  180
NEKPQEPDQN TQDSSTNPPA EISQPERQEM QSKLTKLLSM LDEVDRRYKQ YYQQMQIVVS  240
SFDVIASYGA AKPYTALALQ TISRHFRSLR DAISGEILLK RKCLGEQQDG SDGKRVGIIS  300
RFKYVDQHLR QQRGFMQPQA WRPQRGLPEN SVLILRAWLF EHFLHPYPKD SDKIMLARQT  360
GLSRGQVSNW FINARVRLWK PMVEEIYKEE FTENDSKSSS ENTPKTSEIG PAVDDDEDRA  420
QEFSQDQTKP DHEHGYNEEI CGMVQSSQMD GRRFMAIEPT YHVAEMSKLG RGAVSLTLGL  480
QNSNRHDNVV AMSSEAYNNF SRVDIYENAI PGAELEYVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14327385563Homeobox protein Meis2
3k2a_B1e-14327385563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1322.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0122910.0BT012291.1 Arabidopsis thaliana At4g34610 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283499.10.0BEL1-like homeodomain protein 6
RefseqXP_023634761.10.0BEL1-like homeodomain protein 6
SwissprotO656850.0BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLR0F3V10.0R0F3V1_9BRAS; Uncharacterized protein
STRINGBostr.7867s1322.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.20.0BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]