PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7867s1191.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 29076.4 Da PI: 10.3878 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.4e-17 | 19 | 64 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede l ++v+q+G+++W+ Ia+++ gR++k+c++rw++ Bostr.7867s1191.1.p 19 RGHWRPVEDENLRQLVEQYGPKNWNFIAQHLY-GRSGKSCRLRWYNQ 64 899****************************9.************96 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.9e-17 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++T+eE+e+l++a++ G++ W++Iar ++ gRt++ +k++++ Bostr.7867s1191.1.p 71 KKPFTEEEEERLLKAHRIQGNR-WASIARLFP-GRTDNAVKNHFHV 114 689*******************.*********.**********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.959 | 14 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.85E-29 | 17 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 18 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 20 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.25E-13 | 22 | 63 | No hit | No description |
Pfam | PF13921 | 9.8E-17 | 22 | 82 | No hit | No description |
PROSITE profile | PS51294 | 18.448 | 70 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-14 | 70 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.29E-11 | 73 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-20 | 73 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEMSRGSNSF DNKKPSCQRG HWRPVEDENL RQLVEQYGPK NWNFIAQHLY GRSGKSCRLR 60 WYNQLDPNIT KKPFTEEEEE RLLKAHRIQG NRWASIARLF PGRTDNAVKN HFHVIMARRK 120 RENFSSTATS TFNQTWHNVL SPSSSLTRLN RSQFGLWRYQ KDKSRGLWPY SFVPAPRNDQ 180 FGSSSVSNFR HEIYLERRTS KELVDHHNHI FHAATPDHNK TSGEDGPSMG DDVGKNNVTF 240 IDFLGVGLTS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-34 | 15 | 119 | 3 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7867s1191.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY142517 | 0.0 | AY142517.1 Arabidopsis thaliana putative transcription factor (At4g33450) mRNA, complete cds. | |||
GenBank | AY519611 | 0.0 | AY519611.1 Arabidopsis thaliana MYB transcription factor (At4g33450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010437762.1 | 1e-175 | PREDICTED: myb-related protein A-like | ||||
TrEMBL | R0GN17 | 1e-173 | R0GN17_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.7867s1191.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10133 | 20 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33450.1 | 1e-171 | myb domain protein 69 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7867s1191.1.p |