PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0764.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 359aa    MW: 40224.1 Da    PI: 6.4145
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0764.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.4e-08126146526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C++f++ G Ck Gd+C FaHg
  Bostr.7867s0764.1.p 126 ACPDFRK-GGCKKGDSCEFAHG 146
                          7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5121147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235122148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-6125148IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-6126146IPR000571Zinc finger, CCCH-type
SMARTSM003560.53156179IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.568156180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MMIGETRRTY PTVEIPPSPW PASEDFTSAE LFSPAMDSPD CSMLEALAAL QRYLPSNELD  60
PDSDPDLLGP DSPIDAYSCD HFRMYDFKVR RCARGRSHDW TECPYAHPGE KARRRDPRKY  120
HYSGTACPDF RKGGCKKGDS CEFAHGVFEC WLHPARYRTQ PCKDGGNCRR RVCFFAHSPD  180
QLRCLPNRSP DRVDSFDVSS PIRARAFQLS VSTVSGSPPM SPRADSESSP MTQSLSRSLG  240
SCSINDVVPS FRNLQFNKVK SFPHNCPIFG FGSPRGSILG PGFQSLPTTP TRPGNLDIWD  300
YGLEEEPVME RVVESGRELR EKMREKLHKE NCMDRVDPVP DQSSGDTPDV GWVSDLLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0764.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615740.0AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.
GenBankAY0459700.0AY045970.1 Arabidopsis thaliana unknown protein (At4g29190) mRNA, complete cds.
GenBankAY0793230.0AY079323.1 Arabidopsis thaliana unknown protein (At4g29190) mRNA, complete cds.
GenBankAY0856360.0AY085636.1 Arabidopsis thaliana clone 16432 mRNA, complete sequence.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447881.10.0PREDICTED: zinc finger CCCH domain-containing protein 49-like
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLD7MD420.0D7MD42_ARALL; Zinc finger (CCCH-type) family protein
STRINGBostr.7867s0764.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.10.0C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]