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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7867s0553.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NZZ/SPL | ||||||||
Protein Properties | Length: 319aa MW: 34728.8 Da PI: 8.9379 | ||||||||
Description | NZZ/SPL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NOZZLE | 574.2 | 2.1e-175 | 1 | 318 | 1 | 314 |
NOZZLE 1 matslffmstdqnsvrnpnellrntrlvvnssgeirtetkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklvvatvgdts 90 matslffmstdqnsv+npnellrnt+l vnss eirte++ksrgrkpgsk +qq+qkkptlrgmgvakler + e ekk++ +atvgdts Bostr.7867s0553.1.p 1 MATSLFFMSTDQNSVGNPNELLRNTHLGVNSSSEIRTEPQKSRGRKPGSKKGQQNQKKPTLRGMGVAKLERLRTEAEKKQI-AATVGDTS 89 9******************************************************************************97.689****9 PP NOZZLE 91 svaaisntatrlpvpvdrgvvlqgfpsslgs...srilcggvgsgqvmidpvispwgfvetsatthelssisnpqmynassnnrcdtcfk 177 va +n+atrl d+ vvlqgfpsslg+ +ri+cggvgsgq+midpv+spwg+vets+ helssi+npqmynassn rcdtcfk Bostr.7867s0553.1.p 90 -VAPNPNNATRLLPVPDPVVVLQGFPSSLGGcrsNRIYCGGVGSGQIMIDPVCSPWGYVETST--HELSSIPNPQMYNASSNTRCDTCFK 176 .**********853449*************9999***************************99..************************* PP NOZZLE 178 kkrldgdqnnvvrsngggfskytmipppmngydeyllqsdhhqrsqgflydqriaraasvsaasasinpyfneatnltgsreefgsvleg 267 kkrld dqnnvvrsngggfskytmi ppmn yd+ llq+d +qrsqgf+yd+riar+a + +++s n yfneatn+t s+eefgs++eg Bostr.7867s0553.1.p 177 KKRLDEDQNNVVRSNGGGFSKYTMIHPPMNSYDH-LLQPD-YQRSQGFIYDHRIARSA--PPSATSTNSYFNEATNHTVSMEEFGSYMEG 262 *********************************9.*****.9****************..8999999*********************** PP NOZZLE 268 nprngsrgvkeyeffpgkydervsk.....vakvaslvgdcspn....tidlslkl 314 nprngs+gvkeyeffpgkyd++ + + ++s+vgdcspn tidlslkl Bostr.7867s0553.1.p 263 NPRNGSGGVKEYEFFPGKYDDFPGIhgkriSSVATSVVGDCSPNtsssTIDLSLKL 318 *********************96541112123345678******99999******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08744 | 3.7E-169 | 3 | 318 | IPR014855 | Plant transcription factor NOZZLE |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MATSLFFMST DQNSVGNPNE LLRNTHLGVN SSSEIRTEPQ KSRGRKPGSK KGQQNQKKPT 60 LRGMGVAKLE RLRTEAEKKQ IAATVGDTSV APNPNNATRL LPVPDPVVVL QGFPSSLGGC 120 RSNRIYCGGV GSGQIMIDPV CSPWGYVETS THELSSIPNP QMYNASSNTR CDTCFKKKRL 180 DEDQNNVVRS NGGGFSKYTM IHPPMNSYDH LLQPDYQRSQ GFIYDHRIAR SAPPSATSTN 240 SYFNEATNHT VSMEEFGSYM EGNPRNGSGG VKEYEFFPGK YDDFPGIHGK RISSVATSVV 300 GDCSPNTSSS TIDLSLKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator of sporocyte development (PubMed:10465788). Acts as an adapter-like transcriptional repressor recruiting TPL/TPR corepressors to inhibit TCP transcription factors (PubMed:25378179). Required for nucellus and embryo sac development (PubMed:10500234). Plays a central role in patterning both the proximal-distal and the adaxial-abaxial axes during ovule development (PubMed:12183381). Involved in establishing the prospective chalaza of the ovule and in controlling the cell number and the length of the funiculus, and is required for the development of the integuments (PubMed:10976054). Required, with BEL1, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). Involved in controlling stamen identity (PubMed:19726570). May also regulate the morphology of lateral organs by repressing auxin production (PubMed:18557819). {ECO:0000269|PubMed:10465788, ECO:0000269|PubMed:10500234, ECO:0000269|PubMed:10976054, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:18557819, ECO:0000269|PubMed:19726570, ECO:0000269|PubMed:22786869, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7867s0553.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor AGAMOUS (PubMed:15254538). Regulated by ATXR3/SDG2 via chromatin methylation (PubMed:21037105). Triggered by TGA9 AND TGA10 in anthers (PubMed:20805327). {ECO:0000269|PubMed:15254538, ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:21037105}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493704 | 0.0 | AB493704.1 Arabidopsis thaliana At4g27330 mRNA for hypothetical protein, partial cds, clone: RAAt4g27330. | |||
GenBank | DQ446873 | 0.0 | DQ446873.1 Arabidopsis thaliana clone pENTR221-At4g27330 sporocyteless (At4g27330) mRNA, complete cds. | |||
GenBank | DQ653227 | 0.0 | DQ653227.1 Arabidopsis thaliana clone 0000017356_0000012141 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285000.1 | 0.0 | protein SPOROCYTELESS | ||||
Swissprot | O81836 | 1e-166 | SPL_ARATH; Protein SPOROCYTELESS | ||||
TrEMBL | R0H320 | 0.0 | R0H320_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.7867s0553.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13435 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27330.1 | 1e-151 | sporocyteless (SPL) |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7867s0553.1.p |