PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7867s0349.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | bHLH | ||||||||
Protein Properties | Length: 183aa MW: 20919.2 Da PI: 9.26 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.5e-13 | 28 | 77 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+e+E++RR+++ s ++ L +llP + ++K s ++ + Av+YI +Lq Bostr.7867s0349.1.p 28 VHKEVEKQRRQEMASLYASLHSLLPLEF--IQGKRSTSDQVNGAVNYIEYLQ 77 6*************************65..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.23E-12 | 23 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.074 | 24 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.68E-8 | 26 | 81 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.4E-11 | 27 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-10 | 28 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0014 | 30 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MNDLLEKIRR RPCKKLRVSS EENMEKIVHK EVEKQRRQEM ASLYASLHSL LPLEFIQGKR 60 STSDQVNGAV NYIEYLQRNI KDMSSKRDDL MLLSRRSFGS SNEQGWNEIS NHVVIRPCLV 120 GVEIVFSVLQ TPFSSVLQVL REHSLCVLGC ISSNVNDLAL IDLANLKDTL TLMKQLNDFK 180 KK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7867s0349.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493699 | 1e-134 | AB493699.1 Arabidopsis thaliana At4g25400 mRNA for hypothetical protein, partial cds, clone: RAAt4g25400. | |||
GenBank | AY142621 | 1e-134 | AY142621.1 Arabidopsis thaliana unknown protein (At4g25400) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010448440.1 | 4e-99 | PREDICTED: transcription factor bHLH118 | ||||
Swissprot | Q9STJ7 | 4e-87 | BH118_ARATH; Transcription factor bHLH118 | ||||
TrEMBL | A0A1J3IUJ1 | 1e-91 | A0A1J3IUJ1_NOCCA; Uncharacterized protein | ||||
STRING | Bostr.7867s0349.1.p | 1e-130 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4479 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25400.1 | 2e-89 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7867s0349.1.p |