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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bostr.7816s0001.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family |
GRAS |
Protein Properties |
Length: 510aa MW: 57020.2 Da PI: 4.9052 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bostr.7816s0001.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 270.7 | 4.6e-83 | 145 | 509 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPi 90
++lL cA a+++++ +++q++L+ lselas++g++++Rlaa+ ++AL+++l++ s++++++ p + ++ +++ +al f+evsP+
Bostr.7816s0001.1.p 145 EQLLNPCALAITARNSSRVQHYLCVLSELASSSGNANRRLAAFGLRALQHHLTS--SSVSSSFwPIVTFASAEVKMFQKALLKFYEVSPW 232
689**************************************************9..777777768888887777777777777******* PP
GRAS 91 lkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfAee 171
+ + +aN+aIl+ +++ + +Hi+D+++s+G+QWp+Ll+aL+sRp ++pp++RiT+v++ +++ ++ ++L fA++
Bostr.7816s0001.1.p 233 FALPSNMANSAILQILAQYpidkKDLHILDIGVSHGMQWPTLLEALSSRPeGPPPRVRITVVSDITADipfsVGPPAYSYDSQLLGFARS 322
*****************998888999************************55667*********99999998889999************ PP
GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflea 260
l+++++++vl +++ +++ p+E+l+++ +++lh+l s+++er+e L++++sl+Pk v+++e++ + +s++F+++f+++
Bostr.7816s0001.1.p 323 LNINLQISVL-------DNFQLIDTLPHETLIICAQFRLHHLK---YSIPDERSEALRALRSLRPKGVILCEKDGEGsTSGDFAAGFSRK 402
********96.......566888999****************8...89999999********************9998999********* PP
GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
ley ++++ds+++++ +e+++ Er+l++ e+++v++++g++ +e + kW er++eaGF + +++e+a + ak+llrk++ +++
Bostr.7816s0001.1.p 403 LEYLWKFLDSTSSGF----KEENSEERMLMEGEATKVLMNAGEM----NEGKDKWYERMREAGFAAEAFGEDAIDGAKSLLRKYDnNWEI 484
***********9997....8889999*****************9....9************************************66666 PP
GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
r+e+ + + l Wk++++ ++S W+
Bostr.7816s0001.1.p 485 RMEDGDTFAGLLWKGEAVSFCSLWK 509
6666666666**************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0042446 | Biological Process | hormone biosynthetic process |
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
Protein Sequence Length: 510 aa
Download sequence Send
to blast |
MSLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPENGFI 60 QSYSQDLSAY VSWEAANLEV VTGAPSIDLD APPEIQQPND QSRKRSRDGL IEAQQVKKSA 120 RSKRKASKFS EKSCKDGNKE GRWAEQLLNP CALAITARNS SRVQHYLCVL SELASSSGNA 180 NRRLAAFGLR ALQHHLTSSS VSSSFWPIVT FASAEVKMFQ KALLKFYEVS PWFALPSNMA 240 NSAILQILAQ YPIDKKDLHI LDIGVSHGMQ WPTLLEALSS RPEGPPPRVR ITVVSDITAD 300 IPFSVGPPAY SYDSQLLGFA RSLNINLQIS VLDNFQLIDT LPHETLIICA QFRLHHLKYS 360 IPDERSEALR ALRSLRPKGV ILCEKDGEGS TSGDFAAGFS RKLEYLWKFL DSTSSGFKEE 420 NSEERMLMEG EATKVLMNAG EMNEGKDKWY ERMREAGFAA EAFGEDAIDG AKSLLRKYDN 480 NWEIRMEDGD TFAGLLWKGE AVSFCSLWK*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC237328 | 0.0 | AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence. |