![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.7200s0155.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 609aa MW: 69222 Da PI: 7.1197 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.7e-09 | 404 | 441 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Bostr.7200s0155.1.p 404 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 441 554459******************************88 PP | |||||||
2 | BELL | 107.1 | 1.1e-34 | 262 | 333 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++elqk+kakLls+lee+++rY +y+eq+++ ++sFea++g+g+a++Yt+lA++a+SrhFrcLkd +++qi Bostr.7200s0155.1.p 262 EFMELQKRKAKLLSMLEELKRRYGHYREQMRVAAASFEAAVGVGAAELYTALASRAMSRHFRCLKDGLVGQI 333 679*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 8.1E-43 | 188 | 329 | IPR006563 | POX domain |
SMART | SM00574 | 3.8E-68 | 194 | 331 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.017 | 382 | 445 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.67E-10 | 385 | 446 | No hit | No description |
SMART | SM00389 | 5.6E-9 | 385 | 449 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.08E-17 | 386 | 453 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.6E-28 | 388 | 452 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.0E-18 | 402 | 441 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 609 aa Download sequence Send to blast |
MARDQFYGRN HHHQEQQHQM INQIQGFDET NQNPTDHHHY NHQIFGSNSN MGMMIDFSKQ 60 QQIRMTSGLD HHHHHDQTTG GTDQNQLLED SSSTMRLCNV NNDFPSVVND ERPPQRPSQG 120 LSLSLSSSNP TSISLQSFEL RTQQQQQGYS GKSTHHQNLQ HSQMMMMMMN NHHQNNNHQH 180 HNHHQFQIGS SKYLSPAQEL LSEFCSLGVK ESDEEVMLMK HKRKQKGKQQ EEWDTSHNNN 240 DQHDQSATTS SKKHVPPLHS LEFMELQKRK AKLLSMLEEL KRRYGHYREQ MRVAAASFEA 300 AVGVGAAELY TALASRAMSR HFRCLKDGLV GQIQATSQAL GEREEDNRAV SIAARGETPR 360 LRLLDQALRQ QKSYRQMTLV DAHPWRPQRG LPERAVTTLR AWLFEHFLHP YPSDVDKHIL 420 ARQTGLSRSQ VSNWFINARV RLWKPMIEEM YCEETRGEQM EITNPMMIDT KPDPNQIIRV 480 EPESLSSIVT NPTSKTGQKH NSNQQGTTSF GSTFDFSLYG NQAVTYAGEG GPRGDVSLTL 540 GLQRNDGNGG VSLALSPVTA QGGQLYYGGR DHIEEGPVQY SASMLDDDQV QNLPYRNLMG 600 AQLLHDIV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-15 | 391 | 449 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-15 | 391 | 449 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 4e-15 | 391 | 449 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 4e-15 | 391 | 449 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.7200s0155.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | ATU39944 | 0.0 | U39944.2 Arabidopsis thaliana homeobox protein (BEL1) mRNA, complete cds. | |||
GenBank | AY049237 | 0.0 | AY049237.1 Arabidopsis thaliana AT5g41410/MYC6_12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010441306.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog isoform X2 | ||||
Refseq | XP_019088821.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog isoform X1 | ||||
Swissprot | Q38897 | 0.0 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | D7MIV5 | 0.0 | D7MIV5_ARALL; Uncharacterized protein | ||||
STRING | Bostr.7200s0155.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5866 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41410.1 | 0.0 | TALE family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.7200s0155.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|