PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7200s0089.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 413aa    MW: 45479.6 Da    PI: 8.9701
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7200s0089.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-20275324255
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +grW+AeIrd +     + +r++lg+f+ ae Aa+a+++a+++++g
  Bostr.7200s0089.1.p 275 RYRGVRQRP-WGRWAAEIRDpF-----KaARVWLGTFDNAESAARAYDEAALRFRG 324
                          7********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.159275332IPR001471AP2/ERF domain
PfamPF008471.8E-13275324IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-31275333IPR001471AP2/ERF domain
SMARTSM003802.7E-35275338IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22275333IPR016177DNA-binding domain
PRINTSPR003671.1E-10276287IPR001471AP2/ERF domain
CDDcd000183.81E-27283334No hitNo description
PRINTSPR003671.1E-10298314IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGFRAELNTK EFQAFCITLA NEIDAAIGKN EVPGNVQELA LVLNDVCQRI CDDYQTTAVV  60
MALMISAKSA CQIGWFPQRE SQELLAIIDL MWNGFNSPES VTPSVNSPVS LISQVIERFY  120
PCVKLGHIIV SFGAKPDSKI LVKDFHISKM MPHSRKQRVG LFVVRTDDIS KSSCIVHPQE  180
VRTSDLMERW NHIHGRGINQ TQLPPMPLSQ LHYAMQNQSH NTLTVDQYFS GGTSTPKVRE  240
ASSNMSGPGP IYEYTTTTTA NSAASSFSGD QPRRRYRGVR QRPWGRWAAE IRDPFKAARV  300
WLGTFDNAES AARAYDEAAL RFRGNKAKLN FPENVKLVSP ASTAAAAAQP QTAVQRPTQL  360
RNSGSTTTLL PIRPASDQTV HNSAIDAIVQ LELLRDGSST TSVSAATFYG FI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22274335163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-22274335466ATERF1
3gcc_A1e-22274335466ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7200s0089.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1400920.0AY140092.1 Arabidopsis thaliana putative protein (At5g64750) mRNA, complete cds.
GenBankBT0084800.0BT008480.1 Arabidopsis thaliana At5g64750 gene, complete cds.
GenBankKP0679530.0KP067953.1 Arabidopsis thaliana protein inhibitor of activated STAT-like 1 (PIAL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867647.11e-101E4 SUMO-protein ligase PIAL1 isoform X1
STRINGBostr.7200s0089.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91182137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.16e-54ERF family protein