PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7128s0710.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 444aa    MW: 50849.2 Da    PI: 6.3186
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7128s0710.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.19e-27115209185
             trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                          +Wt+++v++Li+a++++++++  ++         +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +
  Bostr.7128s0710.1.p 115 KWTDKMVKLLITAVSYIGDDSTMDSgsrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPA 204
                          7**************8877777654456677888**********************************************6699999988 PP

             trihelix  81 yfdql 85 
                          ++d++
  Bostr.7128s0710.1.p 205 LLDSI 209
                          88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-24113236No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDGNFPQGGV VRGGASSYGG FDLQGSMRVH HQDSMNQHRH NPNSRPHHEG LPFTMVTGQT  60
CDHHQNMSMT EQHKGEREKN SVSEDDDEPS FTEEGGDGHN EANISTKGSP WQRVKWTDKM  120
VKLLITAVSY IGDDSTMDSG SRRKFAVLQK KGKWKSVSKV MAERGYHVSP QQCEDKFNDL  180
NKRYKKLNDM LGRGTSCQVV ENPALLDSIG YLNDKEKDDV RKIMSSKHLF YEEMCSYHNG  240
NRLHLPHDLA LQRSLQLALR NRDDHDNEDC RKHQMEDLDD EDHDGEGDDH DEYEEQHFSH  300
GDCRGIHYGG GGVGGGPLKK IRQSHSHEDA DHPSHVNSLE CNKVSLAQMP FSQADVNQGG  360
AESGRAASMQ KQWMESRTLQ LEEQKLQIQV ELLELEKQRF RWQRFSKKRD QELERMRMEN  420
ERMKLENDRM GLELKQRELG VDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7128s0710.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0458500.0AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankAY0913780.0AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16F40.0AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307528.10.0uncharacterized protein LOC17897295
TrEMBLR0GX820.0R0GX82_9BRAS; Uncharacterized protein
STRINGBostr.7128s0710.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.10.0sequence-specific DNA binding transcription factors