PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7128s0586.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 406aa    MW: 44463.3 Da    PI: 4.9111
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7128s0586.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48.1e-06352374426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          ++C++f  t  C++G++C + H+
  Bostr.7128s0586.1.p 352 KPCMYFNSTRGCRHGSNCLYQHD 374
                          69********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.258348376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4352375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.49E-5353385IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MRALHKRVSW PPDFKLCQIR LFISEDSPSQ VGSESQDHLQ AKSSLASHPG DDNLPPGFGG  60
PLSADEPQIK LSDIAVIKWK CSVRILLDEE WRVVAGDESN EVKAQNQREL RVLEAFYPGA  120
SSIPPNPSVP TDVENSHYDD QQTIVIPILP VEDDDITMDS ASDLPTESTI TDENASTSST  180
LPPGSDIMAA LSAISNSKEQ GSSMIDQDLL IKILSNPKLV ENLVANCGSA GSVSSNASSL  240
YPSSTHEANG VVTTTPASNG QFYPQPMVTQ CPPMVYPPAP SDQHNYGASP ARDASYYKNL  300
IQQHGEERQE TPPVQQHLGY RYTLQPGGPN PEMINSNNNN QRPRDSKPKI MKPCMYFNST  360
RGCRHGSNCL YQHDAATPYQ PRNLNNGNIN TSEMQSAKRM RFDRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7128s0586.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0077970.0AC007797.7 Arabidopsis thaliana chromosome I BAC F6F9 genomic sequence, complete sequence.
GenBankAK2215790.0AK221579.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-83-G10.
GenBankBT0255570.0BT025557.1 Arabidopsis thaliana At1g19860 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307667.10.0zinc finger CCCH domain-containing protein 6 isoform X1
SwissprotQ56XU40.0C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLR0IPE40.0R0IPE4_9BRAS; Uncharacterized protein
STRINGBostr.7128s0586.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56141418
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]