PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7128s0047.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 455aa    MW: 50810.4 Da    PI: 8.5576
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7128s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-0591113123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ C+k F r  nL+ H r H
  Bostr.7128s0047.1.p  91 FICEVCNKGFQRDQNLQLHKRGH 113
                          89******************988 PP
2zf-C2H214.20.00013168190123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  Bostr.7128s0047.1.p 168 WKCEKCSKKYAVQSDWKAHAKTC 190
                          58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.3E-690113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.46E-790113No hitNo description
PROSITE profilePS5015710.82491113IPR007087Zinc finger, C2H2
SMARTSM003550.02691113IPR015880Zinc finger, C2H2-like
PfamPF121713.4E-591113IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM0035541133163IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4156189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.46E-7163188No hitNo description
SMARTSM00355140168188IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MMMNRDMIFH QQQKQQVEEN MSNLTSASGD QASVSSGNRT ETTGSNINQQ QEQCFVPQSS  60
LKRKRNQPGN PDPEAEVMAL SPKTLMATNR FICEVCNKGF QRDQNLQLHK RGHNLPWKLK  120
QRSNKDVIRK KVYVCPEPGC VHNHPSRALG DLTGIKKHFF RKHGEKKWKC EKCSKKYAVQ  180
SDWKAHAKTC GTKEYKCDCG TLFSRRDSFI THRAFCDALA EESARAIPNT ILIQSSVSPS  240
HDHHHHHQKQ PNINFSSSSQ NIISNNNLHH GPMKQEESHH HFQNIPPWLA SSNPNPNGNN  300
GNLFPRAYSA PTGRSNFQHS SPAMSATALL QKAAQMGSTK STTPEEEERS SRSSYNNLIT  360
TTMAAMMTSP SEPGFGFQDY YMMNHQHHGG GEAFNGAFVA GDDKNDVVDD GGGETRDFLG  420
LRSLMSHNEI LSFANNLGNC LNSSAPEQQH SHQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36164225364Zinc finger protein JACKDAW
5b3h_F2e-36164225364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117130KLKQRSNKDVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7128s0047.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2271940.0AK227194.1 Arabidopsis thaliana mRNA for putative zinc finger protein, complete cds, clone: RAFL09-93-B07.
GenBankAY1504210.0AY150421.1 Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307340.20.0protein indeterminate-domain 7 isoform X2
SwissprotQ8H1F50.0IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLR0ISA40.0R0ISA4_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.7128s0047.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.10.0indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]