PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6864s0290.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 399aa    MW: 45010.2 Da    PI: 6.3228
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6864s0290.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.4e-1355102148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+e+d+ll+ +++ +G ++W++I ++ g+ R + +c+ rw  yl
  Bostr.6864s0290.1.p  55 KGLWTEEDDDLLKAYIANHGARNWNAIHKHSGLSRNGHSCRIRWTYYL 102
                          678*****************************************9886 PP
2Myb_DNA-binding408.8e-13109151246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g+ T+eE+++ v++++q+G+  W+  a++++ gRt +++k++w++
  Bostr.6864s0290.1.p 109 GPLTEEEEKRVVELHAQWGNQ-WTQFAEELP-GRTNNEIKNFWRT 151
                          678****************99.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.06150106IPR017930Myb domain
SuperFamilySSF466896.6E-2554149IPR009057Homeodomain-like
SMARTSM007171.6E-1154104IPR001005SANT/Myb domain
PfamPF002491.7E-1155102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-1956109IPR009057Homeodomain-like
CDDcd001678.18E-958102No hitNo description
PROSITE profilePS5129415.499107157IPR017930Myb domain
SMARTSM007177.2E-10107155IPR001005SANT/Myb domain
PfamPF002495.2E-11109151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-19110155IPR009057Homeodomain-like
CDDcd001671.71E-8112151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
INDGILYQSR LAKTRYTANK GCLLYSVSKY EDKLKMCKVC NGSDDDIAIE KTFRKGLWTE  60
EDDDLLKAYI ANHGARNWNA IHKHSGLSRN GHSCRIRWTY YLRPGLKEGP LTEEEEKRVV  120
ELHAQWGNQW TQFAEELPGR TNNEIKNFWR TRVSRLQRLG LPIYPDEVLQ QAMIPATQSA  180
SSSMSTHKRS RESKTAFPCS GGYAMNEQNP PLWNYPFVDN IPELLLPDSH LLGNATYSFS  240
PGPLIHEVQK LELPSFQYDN SPGSLGAQQS NPMPEHEPEN TLVQSPLTTD HKPSSYLCDG  300
LLESIVYGAS VELEKRATDT DSESPLFQSS LLGHAELTPA HENTNGKLFF SFTLYALYTL  360
HWLCKSPLTF NCETNFGYGG SKSSNERRFD GEDGNNTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-20551557106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6864s0290.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180263.52e-91myb domain protein 104
SwissprotQ9SM271e-92MY104_ARATH; Transcription factor MYB104
TrEMBLA0A1J3HFD41e-92A0A1J3HFD4_NOCCA; Uncharacterized protein
STRINGBostr.6864s0290.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26950.16e-95myb domain protein 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]