PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6864s0249.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 209aa    MW: 22552.8 Da    PI: 6.9866
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6864s0249.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-0583105123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ CgksF++   L  H  +H
  Bostr.6864s0249.1.p  83 YKCSVCGKSFPSYQALGGHKTSH 105
                          9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-481105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.54E-981105No hitNo description
PfamPF139121.2E-1483107IPR007087Zinc finger, C2H2
SMARTSM003550.002283105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78383110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-9136163No hitNo description
PfamPF139122.7E-12140165IPR007087Zinc finger, C2H2
PROSITE profilePS501578.871141163IPR007087Zinc finger, C2H2
SMARTSM003551.2141163IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MALDTLNSPT STTTAPPPPF LRCLDETEPE NLESWTKRKR TKRHRIDQPN PPSEEEYLAL  60
CLLMLARGSS DHHSPPSDHQ KDYKCSVCGK SFPSYQALGG HKTSHRKPVS NNNDDGNNTN  120
ASVTNNGNIN NGLVGQSGKT HNCSICFKSF PSGQALGGHK RCHYDGGNTN GSGNMTSPGF  180
DLNLPADQVS DETIAKSQLS DEETKSVL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6864s0249.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329781e-125AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4.
GenBankBT0293771e-125BT029377.1 Arabidopsis thaliana At3g49930 mRNA, complete cds.
GenBankCP0026861e-125CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291812.11e-113zinc finger protein AZF1
SwissprotQ9SSW13e-70AZF1_ARATH; Zinc finger protein AZF1
TrEMBLR0HHN91e-111R0HHN9_9BRAS; Uncharacterized protein
STRINGBostr.6864s0249.1.p1e-154(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.14e-87C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]