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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Bostr.6864s0236.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
| Family |
MYB |
| Protein Properties |
Length: 295aa MW: 32467.6 Da PI: 6.7856 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.6864s0236.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 62.4 | 9.2e-20 | 6 | 51 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+W++eEde+l + v+++G+++W++I++ ++ gR++k+c++rw +
Bostr.6864s0236.1.p 6 KGPWSQEEDEQLRRMVEKYGPRNWSAISKSIP-GRSGKSCRLRWCNQ 51
79******************************.***********985 PP
|
| 2 | Myb_DNA-binding | 51.2 | 2.8e-16 | 60 | 102 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++++eEde ++ a +++G++ W+tIar ++ gRt++ +k++w++
Bostr.6864s0236.1.p 60 PFSPEEDETILTARAKFGNK-WATIARLLN-GRTDNAVKNHWNST 102
89******************.*********.***********986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MADRVKGPWS QEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP 60
FSPEEDETIL TARAKFGNKW ATIARLLNGR TDNAVKNHWN STLKRKCGGG GVKTTTVTET 120
EVEDQDRPKK RRSVSLDSAF ASVDTGLYMS PESPIGIDVS DSSTIPSPAS PVTQLFKPMP 180
ISGGFTVVPQ PLPVEMSSSL EDPPTSLSLS LPGAENPSSN HNNDNALMFP RFESQMKINV 240
DERGEEGRRG EFMTVVQEMV KAEVRSYMAE MQKTSGGAFV GGFRDCGIIT PKVE*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF424588 | 0.0 | AF424588.1 Arabidopsis thaliana AT3g50060/F3A4_140 mRNA, complete cds. |
| GenBank | AL132978 | 0.0 | AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4. |
| GenBank | AY124828 | 0.0 | AY124828.1 Arabidopsis thaliana AT3g50060/F3A4_140 mRNA, complete cds. |
| GenBank | AY519598 | 0.0 | AY519598.1 Arabidopsis thaliana MYB transcription factor (At3g50060) mRNA, complete cds. |
| GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
