PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

MYB

Protein Properties

Length: 263aa MW: 29623 Da PI: 6.6318

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.6251s0088.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.4e-09	29	75	3	46
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 WT+eE +++ +a + l + +W +Ia+ ++ g+t +++ r+ Bostr.6251s0088.1.p 29 TWTAEENKRFEKALAFLDDKdnpeSWFKIAALIP-GKTVGDVIQRYKE 75 5***************99**********.********975 PP
2	Myb_DNA-binding	46.9	6.3e-15	149	193	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + k++G+g+W+ Ia+ ++Rt+ q+ s+ qky Bostr.6251s0088.1.p 149 PWTEDEHRRFLMGLKKYGKGDWRNIAKNYVTTRTPTQVASHAQKY 193 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	7.979	25	79	IPR017884	SANT domain
SMART	SM00717	9.5E-7	26	79	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-7	29	75	IPR001005	SANT/Myb domain
CDD	cd00167	9.87E-8	29	76	No hit	No description
SuperFamily	SSF46689	6.96E-9	29	84	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-12	141	196	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.482	142	198	IPR017930	Myb domain
SuperFamily	SSF46689	3.59E-17	144	197	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-18	145	197	IPR006447	Myb domain, plants
SMART	SM00717	2.3E-12	146	196	IPR001005	SANT/Myb domain
CDD	cd00167	3.30E-11	149	194	No hit	No description
Pfam	PF00249	1.1E-12	149	193	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MMSSTMNRGI DMFSPENTNW NFQEVREATW TAEENKRFEK ALAFLDDKDN PESWFKIAAL 60 IPGKTVGDVI QRYKELEDDV SDIEAGLIPI PGYGGDASSG ANGDHFFGLE NSGNGYGYDY 120 VVGGKRSLPA MTDCFRLPIP EKERKKGVPW TEDEHRRFLM GLKKYGKGDW RNIAKNYVTT 180 RTPTQVASHA QKYFLRQLTD CKDKRRSSIH DITTVNIPDA DATTTLSPTR TNSFDVFHQP 240 NPHHSFAFAS ASSYCNAFPQ WS*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.6251s0088.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519530	0.0	AY519530.1 Arabidopsis thaliana MYB transcription factor (At5g01200) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010452013.1	1e-171	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	1e-73	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	V4LJX8	1e-161	V4LJX8_EUTSA; Uncharacterized protein
STRING	Bostr.6251s0088.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14884	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01200.1	1e-146	MYB family protein

Link Out ? help Back to Top
Phytozome	Bostr.6251s0088.1.p

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]