PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6192s0004.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GeBP
Protein Properties Length: 77aa    MW: 8824.19 Da    PI: 9.3183
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6192s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57338.33.7e-123260432
               DUF573  4 qrlwseeDeivlLqGlidfkaktgkspsd 32
                          r+wseeDeiv+LqG+idf++++gk +s 
  Bostr.6192s0004.1.p 32 IRVWSEEDEIVVLQGMIDFRSSRGKRSSR 60
                         59**********************96653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.0E-83364IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MVKGTVVLMK KNFLDFNASF LDRLHEFLGN TIRVWSEEDE IVVLQGMIDF RSSRGKRSSR  60
MNSISFEGKE INHSLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6192s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGBostr.6192s0004.1.p5e-48(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-07DNA-binding storekeeper protein-related transcriptional regulator