PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.5325s0124.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | C2H2 | ||||||||
Protein Properties | Length: 255aa MW: 28526.2 Da PI: 6.42 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00081 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F+++ L H +H Bostr.5325s0124.1.p 84 FQCKACKKVFTSHQALGGHRASH 106 89**************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.2E-9 | 83 | 108 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.68E-7 | 83 | 106 | No hit | No description |
PROSITE profile | PS50157 | 10.159 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.072 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.68E-7 | 150 | 177 | No hit | No description |
Pfam | PF13912 | 9.2E-13 | 154 | 178 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.307 | 155 | 177 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.51 | 155 | 177 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 157 | 177 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MNSSCIDFVM FSRGQHDEDN MSRRPWKRER SISTHNHLNL SPNEDEELAN CLVLLSNSGD 60 AHGDHKHGHG KGKTVKKQKS AQVFQCKACK KVFTSHQALG GHRASHKKVK GCFASQDKEE 120 EDEEEYKEDD DEDEDEEEDE DKSTAHIARK RSNAHECTIC HRVFSSGQAL GGHKRCHWLT 180 PSNYLRMTSL HDHHHSVGGP QPLDQPSLDL NLACQEYSVE PTAMSVGMIQ RDGGDNNHNA 240 TSSSWLKLAS GDWS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.5325s0124.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT030040 | 0.0 | BT030040.1 Arabidopsis thaliana At1g02040 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | U89959 | 0.0 | U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002889340.2 | 1e-155 | uncharacterized protein LOC9325404 | ||||
TrEMBL | D7KP49 | 1e-153 | D7KP49_ARALL; Uncharacterized protein | ||||
STRING | Bostr.5325s0124.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13895 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 2e-25 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.5325s0124.1.p |