PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.5325s0123.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

C2H2

Protein Properties

Length: 273aa MW: 30823.5 Da PI: 7.5976

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.5325s0123.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.0004	5	27	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C ksF + L H+r+H Bostr.5325s0123.1.p 5 HKCKLCWKSFVNGRALGGHMRSH 27 79********************9 PP
2	zf-C2H2	12.2	0.00056	170	192	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k+F++ L H +H Bostr.5325s0123.1.p 170 FECETCEKVFKSYQALGGHRASH 192 89***********9999998887 PP
3	zf-C2H2	14	0.00015	216	238	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+Fs+ L H r+H Bostr.5325s0123.1.p 216 HECPICYKVFSSGQALGGHKRSH 238 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.346	5	32	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.59E-9	5	27	No hit	No description
SMART	SM00355	0.03	5	27	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.3E-6	5	28	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	7	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.59E-9	165	192	No hit	No description
PROSITE profile	PS50157	10.824	170	197	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.087	170	192	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	5.1E-11	170	194	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	172	192	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.17E-5	213	242	No hit	No description
SMART	SM00355	0.11	216	238	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.783	216	243	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.8E-13	216	240	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	218	238	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MEEKHKCKLC WKSFVNGRAL GGHMRSHMLI HPLPSQLYPQ PESASSSMAD PGFVLQDDRE 60 SETESSKKPT RKRSRFHRRS IYVSLRHQQS NGEEEKSETA AAEIKIGVKT SEELSDSCTE 120 HEPMSSVSDA ATAEEDVALS LMLLSRDKWE EEEEESDERW KKKKKKRKWF ECETCEKVFK 180 SYQALGGHRA SHKKKRAEPD QGSDELNKKK SSNSQHECPI CYKVFSSGQA LGGHKRSHAK 240 ESTKRGISIS LIDLNLPAPS EEEDLVSSVF NA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	163	ERWKKKK
2	161	167	KKKKKRK
3	162	167	KKKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.5325s0123.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_171705.1	1e-129	C2H2-like zinc finger protein
Swissprot	Q39092	1e-130	ZAT1_ARATH; Zinc finger protein ZAT1
TrEMBL	A0A178W5D7	1e-128	A0A178W5D7_ARATH; Uncharacterized protein
STRING	Bostr.5325s0123.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1465	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	1e-126	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Bostr.5325s0123.1.p

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003]