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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.5325s0092.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | bHLH | ||||||||
Protein Properties | Length: 404aa MW: 45637.6 Da PI: 5.7092 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.5 | 6.5e-05 | 346 | 379 | 17 | 55 |
HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 N++f+ L++++P+ + ++K ++L +++Y+++L+ Bostr.5325s0092.2.p 346 NEKFSILKSMVPTvN------EVDKESVLNNTIKYLQELE 379 9************65......8***************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.1E-50 | 17 | 207 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 9.324 | 329 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-7 | 344 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 0.00207 | 345 | 383 | No hit | No description |
SuperFamily | SSF47459 | 6.41E-8 | 346 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MSSTMADDVE ASRNIRLRKQ LAVAVRSLQW NYAIFWSSSP IQHGVLEWGE GYYNGDIKKR 60 KKKSYEADSK YELQRSKQLR NLYLCMLEGD TTITTTHGHG HDNDGKTSSN VMLSPDDLSD 120 EEWYFLVCMS YVFAPAQCLP GKALATDDTI WLCNAQHAET KLFTRSLLAR SASIQTVVCF 180 PYLGGVIELG VTDLIAEDPN LIQYIKDCLL ETSNPDCSEM NISEGNSKLG KLKDGNLQVW 240 SESDEGLQYK KTLSTVLRFA ANRPKRKDLA SSDSGSSFLR WKSSSVTSNT NYHQKKSNVL 300 WKILHDVPLM HSADEKKMFQ AETTGLSQCV SMEYDDDDPS DKSKENEKFS ILKSMVPTVN 360 EVDKESVLNN TIKYLQELEA RIEELECRIG QRKPTMKENI ILN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 7e-13 | 15 | 209 | 9 | 192 | Transcription factor MYC3 |
4rqw_B | 7e-13 | 15 | 209 | 9 | 192 | Transcription factor MYC3 |
4rs9_A | 7e-13 | 15 | 209 | 9 | 192 | Transcription factor MYC3 |
4yz6_A | 7e-13 | 15 | 209 | 9 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 61 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.5325s0092.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010474787.1 | 0.0 | PREDICTED: transcription factor MYC1-like | ||||
Swissprot | Q8W2F1 | 1e-157 | BH012_ARATH; Transcription factor MYC1 | ||||
TrEMBL | A0A087HKB2 | 0.0 | A0A087HKB2_ARAAL; Uncharacterized protein | ||||
STRING | Bostr.5325s0092.1.p | 0.0 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00480.1 | 1e-154 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.5325s0092.2.p |