PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5325s0049.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 424aa    MW: 47216.9 Da    PI: 7.4084
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5325s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-13266311454
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  Av YI++L
  Bostr.5325s0049.1.p 266 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 311
                          799***********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.326262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.35E-13265316No hitNo description
SuperFamilySSF474595.89E-19265331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-18266325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10266311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-16268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MNIGGVVWNE DDKAIVASLL GKRALDYLLS NSTIVLVPTD IGVVELGSTS CLPESEESML  60
SIRSLFSSSL PPVRTVPAVA LPVVVAEKID DNRTVNASKI FGKDLHNSGF LHHHQHHQQQ  120
PQQQQHRQFR EKLTVRKMDD RAPKRLDAYP NIGNRFMFSN LGNNNNTLLS PTWVQPENYM  180
RTNNVKEAPS KEDFKFLPLQ QSSQRLLPPA QMQIDFSAAS SRASENNSDG EGGAEWADAV  240
GADESGNNRP RKRGRRPANG RAEALNHVEA ERQRREKLNQ RFYALRSVVP NISKMDKASL  300
LGDAVSYINE LHAKLKVMEA ERERLGYSSN PPISLDSDIN VQTSGEDVTV RINCPLESHP  360
ASRIFQAFEE TKIEVINSNL EVSQDTVLHT FVVKSEELTK EKLISTLSRE QSSSVQSRTS  420
SGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-26260322264Transcription factor MYC2
5gnj_B1e-26260322264Transcription factor MYC2
5gnj_E1e-26260322264Transcription factor MYC2
5gnj_F1e-26260322264Transcription factor MYC2
5gnj_G1e-26260322264Transcription factor MYC2
5gnj_I1e-26260322264Transcription factor MYC2
5gnj_M1e-26260322264Transcription factor MYC2
5gnj_N1e-26260322264Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5325s0049.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0236280.0AC023628.3 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete sequence.
GenBankAF2516980.0AF251698.1 Arabidopsis thaliana putative transcription factor BHLH13 mRNA, complete cds.
GenBankAF4885590.0AF488559.1 Arabidopsis thaliana clone bHLH013 putative bHLH transcription factor mRNA, complete cds.
GenBankAK3177480.0AK317748.1 Arabidopsis thaliana AT1G01260 mRNA, partial cds, clone: RAFL22-57-C11.
GenBankAY0790120.0AY079012.1 Arabidopsis thaliana At1g01260/F6F3_25 mRNA, complete cds.
GenBankAY1207520.0AY120752.1 Arabidopsis thaliana transcription factor MYC7E, putative (At1g01260) mRNA, complete cds.
GenBankBT0045170.0BT004517.1 Arabidopsis thaliana At1g01260/F6F3_25 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001077440.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RefseqNP_001184883.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RefseqNP_171634.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLB9DI370.0B9DI37_ARATH; AT1G01260 protein (Fragment)
STRINGBostr.5325s0049.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-169bHLH family protein
Publications ? help Back to Top
  1. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  2. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]