 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Bostr.5022s0117.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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| Family |
GeBP |
| Protein Properties |
Length: 352aa MW: 39324 Da PI: 6.1268 |
| Description |
GeBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.5022s0117.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF573 | 94.6 | 1e-29 | 68 | 162 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91
lf r+w+eeDe++lL+Gl+d+kak g + + d dafy+f+ +si +k+sk+q+ +Kir+L+ +f + +k+++g++ ++++++++f+l
Bostr.5022s0117.1.p 68 LFIRIWNEEDELALLKGLVDYKAKSGYNTKIDRDAFYRFLGGSIVAKFSKNQVYSKIRKLRSRFLVHLEKTNEGND--SKSSSYSEAFGL 155
688*******************************************************************777777..6778889***** PP
DUF573 92 skkiWgs 98
s++iWg+
Bostr.5022s0117.1.p 156 SMMIWGQ 162
*****96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MPPKIMVSPK QLNLSSSGGA GDCDDTFARR KSLRNFSSKR AASDAAEEET KKKKKKTKKE 60
KTKSDSPLFI RIWNEEDELA LLKGLVDYKA KSGYNTKIDR DAFYRFLGGS IVAKFSKNQV 120
YSKIRKLRSR FLVHLEKTNE GNDSKSSSYS EAFGLSMMIW GQNQAEFAHD DDGISKEMLK 180
EHEEPINENG ALIITDNGTA RVAQQSESGE EMLKENEEPV NENGAVIITD NGTARVAQQS 240
ESGEEMLKEH EEKRVNENEA AKTTESGTNA GKESHDDDDE LCAVRDAFKS VMSQGLSDYQ 300
KKLQLEKLMN IGTGKRRELS NEWKALCVEE GRLKIMKLRF SVKLAEAAND S*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. May play redundant roles with GEBP and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC006053 | 4e-92 | AC006053.3 Arabidopsis thaliana chromosome 2 clone F3N11 map B68, complete sequence. |
| GenBank | AY096417 | 4e-92 | AY096417.1 Arabidopsis thaliana unknown protein (At2g25650) mRNA, complete cds. |
| GenBank | CP002685 | 4e-92 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT2G25650.1 | 1e-137 | DNA-binding storekeeper protein-related transcriptional regulator |
