PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Bostr.5022s0060.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

GeBP

Protein Properties

Length: 366aa MW: 42416.4 Da PI: 10.5513

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.5022s0060.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	94	1.6e-29	172	270	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqk 87 lf r +seeDe+vlL + df+a+ g +p+++idafyefvk+sisf+++k+qlv+Kir+L++Kf +k k ++++++fsk+ d+ Bostr.5022s0060.1.p 172 LFARKFSEEDEVVLLERIFDFTATGG-NPTENIDAFYEFVKNSISFDATKDQLVTKIRNLRRKFDEKILKshenGIKEDQIVFSKAFDRR 260 6899***************76655.*********************************99987755446678999***** PP DUF573 88 ifelskkiWg 97 +f+ls+kiWg Bostr.5022s0060.1.p 261 CFDLSRKIWG 270 *******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.9E-27	173	270	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MDKERYSRSH RDDRDRDRDR DSSPDHPLRR EGGRRRDRDG DSKRRNSNHE RDRTKDRARD 60 RGRSVERGER EGSRDRDHER SHEGSKEKEA RKSNSSDEES EPVAESKKEE SFKTPAKTSV 120 VSKPSGSKTT TKPSHVVTLP AKRSLEKTEK VSRKKPTSKE DVKNEEKPKQ NLFARKFSEE 180 DEVVLLERIF DFTATGGNPT ENIDAFYEFV KNSISFDATK DQLVTKIRNL RRKFDEKILK 240 SHENGIKEDQ IVFSKAFDRR CFDLSRKIWG PDGVLPSKKM RQGQLGRRVK DDEDEKPKRH 300 AYISTPLSFG LDKVKDGPKK REFGERLKKM NAKQAELCMK RIGFMNDVAT LIFKRDKTSS 360 SSVLK*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MDKERYSRSH RDDRDRDRDR DSSPDHPLRR EGGRRRDRDG DSKRRNSNHE RDRTKDRARD  60
RGRSVERGER EGSRDRDHER SHEGSKEKEA RKSNSSDEES EPVAESKKEE SFKTPAKTSV  120
VSKPSGSKTT TKPSHVVTLP AKRSLEKTEK VSRKKPTSKE DVKNEEKPKQ NLFARKFSEE  180
DEVVLLERIF DFTATGGNPT ENIDAFYEFV KNSISFDATK DQLVTKIRNL RRKFDEKILK  240
SHENGIKEDQ IVFSKAFDRR CFDLSRKIWG PDGVLPSKKM RQGQLGRRVK DDEDEKPKRH  300
AYISTPLSFG LDKVKDGPKK REFGERLKKM NAKQAELCMK RIGFMNDVAT LIFKRDKTSS  360
SSVLK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.5022s0060.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010474628.1	4e-87	PREDICTED: probable transcription factor At4g01260
Swissprot	O04608	8e-71	STKLR_ARATH; Probable transcription factor At4g01260
TrEMBL	R0G095	1e-81	R0G095_9BRAS; Uncharacterized protein
STRING	Bostr.5022s0060.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19132	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01260.1	3e-73	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Bostr.5022s0060.1.p