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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bostr.3751s0043.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family |
M-type_MADS |
Protein Properties |
Length: 466aa MW: 53011.5 Da PI: 8.2298 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bostr.3751s0043.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 79.2 | 2.9e-25 | 58 | 107 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+++++s +++++s+R+++++KKA+ELS+LC++ev+vi+++++gkl+++++
Bostr.3751s0043.1.p 58 SSSSYSLASTSLSNRLKTVFKKASELSILCEIEVCVIYYGPDGKLKTWPK 107
799*********************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 466 aa
Download sequence Send
to blast |
MSESEKYKCN FLTLATKNFY KYIYYTKFLS HCHTSSSFVT KPKFVSEITM RSSRSSSSSS 60 SYSLASTSLS NRLKTVFKKA SELSILCEIE VCVIYYGPDG KLKTWPKEKE KVKDMALRYS 120 QLTEALRRKK SVNLYGFLNK KKIKDLMNLN KERKTGPKKV NGLKYPISDH YSSDQVSQLI 180 QSLELNFSIF QERLRIVESK KHKETKLDHQ SLASSSLNHQ QDQHLQTQSL NPSQFSLIMY 240 NHGDNSFSQI PVSASNFNQD FSALLQESEL KNHLMKQELC GYGQNMCMSD ITNNNFQYSC 300 VSNKEAVQES MNNFGLNQLM QKQFYGCNQN MCMGNINSNN FQHPCVSNTE HYSAVQESVN 360 NIGLNQLMQH ELYGYDQNMC TSHITNSNVP DPGLSNTVSY GFCSDYQDSC GNNMVGNTSF 420 SQNLSDMSSN YVFNFDESSL FQTSTLPSLS TIPNSYLLSD NSRFL*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |