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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bostr.3751s0039.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family |
M-type_MADS |
Protein Properties |
Length: 484aa MW: 55464.1 Da PI: 8.025 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bostr.3751s0039.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 75.3 | 4.6e-24 | 5 | 54 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
r++++s +++++s+R+++++KKA+ELS+LC++ v+vi+++++g+l+++++
Bostr.3751s0039.1.p 5 RSSSYSLASTSLSNRLKTVFKKASELSILCEVVVCVIYYGPDGELKTWPK 54
89**********************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 484 aa
Download sequence Send
to blast |
MRSSRSSSYS LASTSLSNRL KTVFKKASEL SILCEVVVCV IYYGPDGELK TWPKEKEKVK 60 DLALRYSQLT EALRRKKSVN LYGVLNKKKI KYSTEVRQSS NPNPTIQSFT GNYLNLRLHT 120 TQKSIFQARI DRSRPLIDRS RILINEPGQH GTRLLRHPNT SLYRKKCNNF NYKERLGIRM 180 LQYPISDHYS SDQVSQLIQS LELNFSKFQE RLRFVESQKH KETKLDHQSL ASYSLNHQQH 240 QHLQTQSMNP SQFSLIMYNH GDNTFSQIPV SASNFNQNFS ALLQESELKN HLMKLEICGY 300 DQNMCMSDIT NNNFQHPCFS DKEAVQESMN NFGLNQLMLE DFYGCDQNMC MGNINSNNFQ 360 HPCVSNTEHY SAVQESMNNI RLNQLMQHEL YGYDQNMCTS DITNSSVPDP GLSNTVSYGF 420 CSDSQDSCGN NMVGNTSFSQ NLSDMSSNYV FNFDESSLFQ TSTLPSLSTI PNSYLLSENS 480 RFL*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB010072 | 1e-132 | AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6. |
GenBank | BT030016 | 1e-132 | BT030016.1 Arabidopsis thaliana At5g41200 mRNA, complete cds. |
GenBank | CP002688 | 1e-132 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |