PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3751s0030.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 314aa    MW: 35833.6 Da    PI: 8.8346
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3751s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.96.3e-24553250
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         r++++s +++++s+R+++++KKA+ELS+LC++ev+vi ++++g+l+++ 
  Bostr.3751s0030.1.p  5 RSSSYSLASTSLSNRLKTVFKKASELSILCEVEVCVIHYGPDGELKTWT 53
                         89**********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.017156IPR002100Transcription factor, MADS-box
SMARTSM004329.7E-4155IPR002100Transcription factor, MADS-box
PfamPF003198.2E-141352IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-151488IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MRSSRSSSYS LASTSLSNRL KTVFKKASEL SILCEVEVCV IHYGPDGELK TWTKEKEKVK  60
DMALRYSQLT EALRRKKSVN LYGFLNKKKI KNLKNLNKEK KTSLKKVNGL KYPISDHYSS  120
DQVSQLIQSL ELNFSKFQER LLFVESQKYK ETKLDHQSLA SSTLNHQHLQ TQSLNPSQFS  180
LIMYNHGDNT FSQIPVSASN FNQDFLALLQ ESELKKKQEL CGYDQNMCMS DITNNNFQHP  240
CISNKEAVQE SANNFGLNQL MQKEFYGCDQ NMCMGNINSN NFQHPCVSEN YSAVQESVNN  300
IGLNQLMQHG LYG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3751s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872955.11e-159agamous-like MADS-box protein AGL75
SwissprotQ9FLL01e-152AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLD7MJI61e-159D7MJI6_ARALL; Predicted protein
STRINGBostr.3751s0030.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.11e-145AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]