PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3640s0180.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 514aa    MW: 57008 Da    PI: 8.0269
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3640s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-05108130123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Bostr.3640s0180.1.p 108 FVCEICNKGFQRDQNLQLHRRGH 130
                          89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-5107130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.73E-6107130No hitNo description
PROSITE profilePS5015710.949108130IPR007087Zinc finger, C2H2
SMARTSM003550.017108130IPR015880Zinc finger, C2H2-like
PfamPF121718.2E-5108130IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SMARTSM00355240150180IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.73E-6180205No hitNo description
SMARTSM00355180185205IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MMNQDMLLDQ HHHQPQQVQH QQDENMSNLT SASGDQASVS SGNITEASGS NYFPHHQQQQ  60
EQQQQQQQQF FVPDSQPQKK RRNQPGNPDP ESEVIALSPK TLMATNRFVC EICNKGFQRD  120
QNLQLHRRGH NLPWKLKQRS NKEVIRKKVY VCPEASCVHH DPSRALGDLT GIKKHFCRKH  180
GEKKWKCDKC SKKYAVQSDC KAHSKTCGTK EYRCDCGTLF SRRDSFITHR AFCEALAEQT  240
AREVVLPQNQ NNQPNPLLIH QSSYHPHQTQ PNINVSSSSS SSHNIINSLH FDTNNGTNNE  300
NSCSNHLHTF PMKKEQQSND HIINYHHSIP PWLAPQPQDL TSSNPNPSNG GGGGLFSLAS  360
PAMSATALLQ KAAQMGSTKT PPLPPTTDFE RSTHNNNLTT TMAAMMTSAS GFINSNNNNQ  420
VLFQDYNASG FDHHGGEEAF DDTFGGFLRT NEATTASAAR SDKSKSGGGE GLTRDFLGLR  480
PLISHNEILS FAGLGNCINS SASDQLHPKP WQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-31181249371Zinc finger protein JACKDAW
5b3h_F4e-31181249371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134147KLKQRSNKEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00355DAPTransfer from AT3G13810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3640s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6305040.0AJ630504.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g13810.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501294.10.0PREDICTED: protein indeterminate-domain 11-like isoform X3
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A1J3FCK10.0A0A1J3FCK1_NOCCA; Protein indeterminate-domain 11 (Fragment)
STRINGBostr.3640s0180.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]