PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

MYB

Protein Properties

Length: 254aa MW: 28375.9 Da PI: 7.4716

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.3640s0147.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.7e-17	26	73	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEde+lv +k+ G g+W++ +++ g+ R++k+c++rw +yl Bostr.3640s0147.1.p 26 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 73 89****************************99**********97 PP
2	Myb_DNA-binding	49.3	1.2e-15	80	124	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g T +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Bostr.3640s0147.1.p 80 GGITSDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 124 56699**************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.1E-22	17	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.503	21	73	IPR017930	Myb domain
SuperFamily	SSF46689	2.82E-29	22	120	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-13	25	75	IPR001005	SANT/Myb domain
Pfam	PF00249	7.3E-15	26	73	IPR001005	SANT/Myb domain
CDD	cd00167	1.37E-11	28	73	No hit	No description
PROSITE profile	PS51294	24.087	74	128	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-24	77	128	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-14	78	126	IPR001005	SANT/Myb domain
Pfam	PF00249	4.0E-14	81	124	IPR001005	SANT/Myb domain
CDD	cd00167	7.18E-12	83	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0010468	Biological Process	regulation of gene expression
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MMSSCGGKKP VSKKTTPCCT KMGMKRGPWT VEEDEILVSF IKKEGEGRWR SLPKRAGLLR 60 CGKSCRLRWM NYLRPSVKRG GITSDEEDLI LRLHRLLGNR WSLIAGRIPG RTDNEIKNYW 120 NTHLRKKLLR QGIDPQTHKP LDVNNIHKPE EEVSSGQNPL EPNSSSHTDT TVNSGDGAGK 180 NSINVFGGGD DYEDFGFCYD DKFSSFLNSL INDDDDPFGN IIPISQPLHM DDCTNEIVGA 240 SSSLGHDQRQ ENI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-27	24	128	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.3640s0147.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519587	0.0	AY519587.1 Arabidopsis thaliana MYB transcription factor (At3g13540) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010500684.1	1e-171	PREDICTED: transcription repressor MYB5 isoform X1
Swissprot	Q38850	1e-163	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	D7L1F4	1e-164	D7L1F4_ARALL; Uncharacterized protein
STRING	Bostr.3640s0147.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-152	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Bostr.3640s0147.1.p

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]