PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3640s0138.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 272aa    MW: 31585.2 Da    PI: 9.2636
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3640s0138.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016121142223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C  Cgk F + ++L  H+r+H
  Bostr.3640s0138.1.p 121 RCCLCGKEFQTMHSLFGHMRRH 142
                          7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.52E-64973No hitNo description
PROSITE profilePS501578.9125178IPR007087Zinc finger, C2H2
SMARTSM003551.35173IPR015880Zinc finger, C2H2-like
PfamPF139120.0115373IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SuperFamilySSF576672.52E-6115142No hitNo description
SMARTSM003550.091120142IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806120142IPR007087Zinc finger, C2H2
PfamPF139123.3E-4121144IPR007087Zinc finger, C2H2
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MKRTRDPYDD ESFSSESEEF QRRKIRLKVK LAEERSEDKE DESLQQPQKK HFCVICEKQF  60
SSGKAYGGHV RIHSIEYNNK GKMKKMKMKK KKKKKRKIGL VKEEKEKEKD LISADMEGNI  120
RCCLCGKEFQ TMHSLFGHMR RHPDRSWKGI RPPPSPEKFK LSYLGDDDDD VMSDVTEDVQ  180
DAACILMMLS YNSSNYWAGM KKAMESPKSE VRSSSCYKGK DKVLGDGGVD DKKGLIVDMK  240
IKMEIEVKKN NPRDEAKSLF YHEDHPYSCW N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896KKKKKKKRK
29096KKKKKRK
39196KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3640s0138.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0051681e-172AC005168.3 Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete sequence.
GenBankCP0026851e-172CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010468152.11e-114PREDICTED: uncharacterized protein LOC104748169
TrEMBLD7LFE41e-113D7LFE4_ARALL; Uncharacterized protein
STRINGBostr.3640s0138.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.13e-84C2H2 family protein