PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3640s0048.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 237aa    MW: 27140.8 Da    PI: 7.256
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3640s0048.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.11.5e-312378155
              G2-like  1 kprlrWtpeLHerFveaveqLGGse.kAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprlrWt eLHerFv+av++LGG++ +AtPkti+++m+vkgLtl+h+kSHLQk+Rl
  Bostr.3640s0048.2.p 23 KPRLRWTAELHERFVDAVTHLGGPDtEATPKTIMRVMGVKGLTLYHLKSHLQKFRL 78
                         79*********************9846****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-302079IPR009057Homeodomain-like
PROSITE profilePS5129411.2492081IPR017930Myb domain
SuperFamilySSF466894.3E-162279IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-222379IPR006447Myb domain, plants
PfamPF002497.2E-82576IPR001005SANT/Myb domain
PfamPF143796.1E-15125164IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MMQSREEMRD ESSSGLVLTT DPKPRLRWTA ELHERFVDAV THLGGPDTEA TPKTIMRVMG  60
VKGLTLYHLK SHLQKFRLGK QPHKEHSQNH SINIRDTNRA SMLDLRRNAV FMTSPLIIGR  120
NMNEMQMEVQ RRIEEEVEIE RQVNQRIEAQ GKYMESMLEK ACETQEASLT KNYSTLFFDR  180
TNICNNTSAL PIPWFEDHFP SSSSMDSTLI LPDINSNFPL QDSRSSITKG RTVCLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-172380258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-172380258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-172380157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-172380157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-172380157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-172380157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-172380258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-172380258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-172380258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-172380258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-172380258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-172380258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00351DAPTransfer from AT3G12730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3640s0048.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0707640.0AY070764.1 Arabidopsis thaliana AT3g12730/MBK21_9 mRNA, complete cds.
GenBankAY1439160.0AY143916.1 Arabidopsis thaliana At3g12730/MBK21_9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465051.11e-170PREDICTED: myb family transcription factor PHL12 isoform X1
RefseqXP_010465052.11e-170PREDICTED: myb family transcription factor PHL12 isoform X2
SwissprotQ8VYI21e-167PHLC_ARATH; Myb family transcription factor PHL12
TrEMBLA0A178V5I91e-164A0A178V5I9_ARATH; Uncharacterized protein
STRINGBostr.3640s0048.1.p1e-178(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.11e-152G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]