PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3359s0130.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 399aa    MW: 44868.5 Da    PI: 8.252
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3359s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32224277255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Bostr.3359s0130.1.p 224 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 277
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-15221277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28222277IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-23224277IPR006447Myb domain, plants
PfamPF002492.7E-7225276IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEGHEEL DLGFWRRALD SRTSSLVSNS  60
SSKTTNHPFQ DLSLSNNSHH QLQHQQNHHH HPHLLPNCNG SNFMTSFQFP TQQQQQQQHL  120
QGFLAHDLNT HLRPIRGIPV YHNPPPHHHH RPPPPCFPFD PSSLIPSSSS SSPSLTGNNN  180
SFNTSSASNS GLITNPNYHN HHHQTLNRAR FMPKFPAKRS MRAPRMRWTT TLHARFVHAV  240
ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG  300
DNNSDDWMFD MNRKSRDSEE LTNPLEKSNS LWTNSSGEAR LHGKLIDNVA EIMLPSEKEI  360
DGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16225279458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16225279458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-16225279357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16225279357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16225279357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16225279357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16225279458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16225279458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16225279458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16225279458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16225279458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16225279458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3359s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0486890.0AY048689.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI2 (KAN2) mRNA, complete cds.
GenBankBT0292110.0BT029211.1 Arabidopsis thaliana At1g32240 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461043.10.0PREDICTED: probable transcription factor KAN2
SwissprotQ9C6160.0KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A0D2ZR210.0A0A0D2ZR21_BRAOL; Uncharacterized protein
STRINGBostr.3359s0130.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53872850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.10.0G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]