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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Bostr.3288s0206.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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| Family |
DBB |
| Protein Properties |
Length: 329aa MW: 36145.2 Da PI: 6.8226 |
| Description |
DBB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.3288s0206.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 24 | 8.2e-08 | 3 | 34 | 4 | 35 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
+C+ ++++e++ fC+ ++ lC C H+
Bostr.3288s0206.1.p 3 IRCDVCDKEEASVFCTADEASLCGGCDHRVHH 34
58*************************99974 PP
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| 2 | zf-B_box | 30.6 | 6.9e-10 | 57 | 94 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
+ C+ +++k++ lfC++++ lC+dC +++H Ht
Bostr.3288s0206.1.p 57 SPLCDICQDKKALLFCQQDRAILCKDCDSSIHAAneHT 94
689*****************************556776 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MKIRCDVCDK EEASVFCTAD EASLCGGCDH RVHHANKLAS KHLRFSLLYP SSSNNTSPLC 60
DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF LLTGVKLSAT ASVYKPTSES 120
SFSSSSQDCS VPGSSISNPP LKKPLSAPPQ SNNNNSKIQP GDATMNQWGS TSTISEYLID 180
TLPGWHVEDF LNFSLPPFGF SKSGDDDGML PYVEAEDDST KRNNNDTVSL PSKSLGIWVP 240
QIPQTLPSSY PNHYFSQDNI IQFGIYNKGT SPEVQSYAPI QNMKQQGQNN KRCYDDGGFT 300
VPQITTATTT TFTHPPPLSS NKKNRSFW*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493536 | 0.0 | AB493536.1 Arabidopsis thaliana At1g75540 mRNA for hypothetical protein, partial cds, clone: RAAt1g75540. |
| Publications
? help Back to Top |
- Xu D, et al.
BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
[PMID:27325768] - Xu DB, et al.
The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis.
Mol Plant, 2017. 10(9): p. 1206-1223
[PMID:28827171] - Xu D,Jiang Y,Li J,Holm M,Deng XW
The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
Plant Physiol., 2018. 176(3): p. 2365-2375
[PMID:29259103] - Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
Plant Physiol., 2018. 176(4): p. 2963-2976
[PMID:29439209] - Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
Plant Physiol., 2018. 177(1): p. 369-380
[PMID:29555784] - Kang X, et al.
HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
Plant Cell Environ., 2018. 41(8): p. 1912-1925
[PMID:29748960]
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