PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

ERF

Protein Properties

Length: 206aa MW: 22639.1 Da PI: 6.2713

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.3288s0201.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.3	9e-19	41	90	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f+t eAa a++ a++kl+g Bostr.3288s0201.1.p 41 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSREAALAYDSAARKLYG 90 69**999.******8...3.35***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.25E-30	40	100	No hit	No description
SuperFamily	SSF54171	1.9E-21	41	100	IPR016177	DNA-binding domain
Pfam	PF00847	4.5E-14	41	90	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.983	41	98	IPR001471	AP2/ERF domain
SMART	SM00380	8.2E-34	41	104	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.3E-30	41	99	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.1E-10	42	53	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.1E-10	64	80	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MSSIEPKVMM VGANKKQRTV QASSRKGCMR GKGGPDNASC TYKGVRQRTW GKWVAEIREP 60 NRGARLWLGT FDTSREAALA YDSAARKLYG PEAHLNLPES LRRYPETASL GTSQTTPSRN 120 TGGKSSDSES PCSSNEMSSC GRMTEEISWE HINVDLPVLD DSSIWEEATM SLGFPWVNEG 180 DNDISRFDTC ISGGYSNWDS FHSPL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-17	42	98	3	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	1e-17	42	98	6	63	ATERF1
3gcc_A	1e-17	42	98	6	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269\|PubMed:11798174}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00240	DAP	Transfer from AT1G75490	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.3288s0201.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high-salt stress. {ECO:0000269\|PubMed:11798174}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006434	0.0	AC006434.5 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence.
GenBank	AC023754	0.0	AC023754.3 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence.
GenBank	AK119132	0.0	AK119132.1 Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL21-48-H08.
GenBank	AK175902	0.0	AK175902.1 Arabidopsis thaliana mRNA for transcription factor DREB2A like protein, complete cds, clone: RAFL22-54-M24.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006302829.1	1e-135	dehydration-responsive element-binding protein 2D
Swissprot	Q9LQZ2	1e-136	DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBL	R0GIK8	1e-134	R0GIK8_9BRAS; Uncharacterized protein
STRING	Bostr.3288s0201.1.p	1e-151	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5399	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75490.1	1e-133	ERF family protein

Link Out ? help Back to Top
Phytozome	Bostr.3288s0201.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]