PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3288s0184.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 445aa    MW: 47985.4 Da    PI: 8.6653
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3288s0184.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.29.8e-12326327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                          elCr+f+r G C+yG++C+F H++
  Bostr.3288s0184.1.p  3 KELCRNFQR-GSCRYGENCRFLHPQ 26
                         69*******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-8126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.15127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-8326IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MRKELCRNFQ RGSCRYGENC RFLHPQQAKP NNPFGFGTQT QQQPQQQQHQ QQKSSNPFGF  60
GVQSGGSSRS NQFQPFENTW SRTASTPSAA AGASAQQTGK QTQPADHKCT DPAACKRIMQ  120
DDFKNERPMW KLTCYGHWKY FPCDVTGDIS YEELRAMAYE EAKRGIPLQS IVERERNLQN  180
SKIAEFENFL RNPYKGSVTA NQSPFAATIP SIFPPTGQIN SSPPAFSGFN QQTAFPNTNA  240
GGLSSSGPPN AFASFNQQSN NQQTTFPNTN AGGVSSSGPP NPFASFNQQS NNQQTAFPNT  300
NSGGVSSSGP PNAFASFNQQ PNAFSIKTPQ PVPSGPSGFQ NHPSTTFKPA SFGPGPGLAT  360
TPQNNNIFGP STPTPAPNTS QNNQTAFNFN VPATSFSAPA VDTTNTSSGN ELQMKGDPVD  420
SSVWLKEKWN PGEIPEQAPP DAFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3288s0184.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0147440.0BT014744.1 Arabidopsis thaliana At1g75340.1 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891135.10.0zinc finger CCCH domain-containing protein 16
SwissprotQ9FWS30.0C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLD7KSN00.0D7KSN0_ARALL; Zinc finger (CCCH-type) family protein
STRINGBostr.3288s0184.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.10.0C3H family protein