PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3288s0071.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 632aa    MW: 72512.9 Da    PI: 4.8835
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3288s0071.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016602621221
                          EETTTTEEESSHHHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                          +C  Cg+ F ++  L++H+ 
  Bostr.3288s0071.1.p 602 ECDRCGEEFESRTKLHKHLA 621
                          5*****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465658.5E-236109IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1106.2E-23880IPR001623DnaJ domain
SMARTSM002716.8E-221073IPR001623DnaJ domain
CDDcd062576.28E-161170IPR001623DnaJ domain
PROSITE profilePS5007619.3081181IPR001623DnaJ domain
PfamPF002262.8E-201278IPR001623DnaJ domain
PRINTSPR006251.4E-141331IPR001623DnaJ domain
PRINTSPR006251.4E-143146IPR001623DnaJ domain
PRINTSPR006251.4E-145373IPR001623DnaJ domain
PROSITE patternPS0063605877IPR018253DnaJ domain, conserved site
SuperFamilySSF576672.53E-15296351No hitNo description
SMARTSM004511.4E-7306340IPR003604Zinc finger, U1-type
PfamPF121713.5E-10308334IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.82309333IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280311333IPR007087Zinc finger, C2H2
SMARTSM003555.2601625IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723601630IPR007087Zinc finger, C2H2
PROSITE patternPS000280603625IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MASSSRSEKR CHYEVLGISK ESSPDEIRSS YRRLALQRHP DKLMKAGGLS EAEATAQFQE  60
LVHAYEVLSD PKERAWYDSH RSQILFADHG SAGGMPGGSV PDLFAFFSTT VYSGYSDTGK  120
GFYKVYYDVF NSVYLNEIKF ARTLGLRMDS VREAPIMGNL ESPYAQVMAF YNYWLGFCTV  180
MDFCWVDEYD VMAGPNRKSR RLMEEENKKV RKKAKREYND TVRGLAEFVK KRDKRVIDMM  240
VKKNAEMEKK KEEERERKKK LEKERMERAM NYEEPDWAKA QAQDGEEEGA GFNVLEEEDD  300
DAKRKNEQLY CIVCSKKFKS EKQWKNHEQS KKHKEKVAEL RESFTDYEEE IEEEEIDGPL  360
DQPESVEQLH EKLQEGLNID SEEKDVEDEV AGEADETDEE YFMADEDIKG SSESEDEDVD  420
DEMSLLKKMV SGQKSKRKNV VSKEEDEIEV EIESNTAESG EFDNQKSTGR KKEAKEERNK  480
QNAGKDMADD TSKVQIPGDD GNPDENVNAT DSSSGVFEDS PKDEVDSMQY DNRKSTGRRR  540
RSKKGKDKNN HGGLTEKSSE ADDTQYVNRD MEAQDYKKAP RSKKSTRGMK TKGTTKKNSN  600
NECDRCGEEF ESRTKLHKHL ADSGHATVKS R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bq0_A7e-12980268DNAJ
1xbl_A7e-12980268DNAJ
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207215KKVRKKAKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3288s0071.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0205790.0AC020579.5 Arabidopsis thaliana chromosome 1 BAC F1O17 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300406.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLR0HTW80.0R0HTW8_9BRAS; Uncharacterized protein
STRINGBostr.3288s0071.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.10.0DNAJ heat shock N-terminal domain-containing protein